GBrowse Details

Vigan.02G132500.01

Basic Information:
Name: Vigan.02G132500.01
Multiple alignment
Variant Information
Position: Chr02:11850664..11854426 (+ strand)
Length: 3763
Functional Information:
Description: Similar to Uncharacterized protein. [I1KA86, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Drug/metabolite transporter (IPR000620)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.10,0.80,4.56,233.97,0.27,4.31,44.42
Automatic updates:
Name: NM_001255798 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100811984 (LOC100811984), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:11850664..11850795 (+ strand)
Length: 132
Type: five_prime_UTR
Position: Chr02:11850796..11850980 (+ strand)
Length: 185
Type: CDS
Position: Chr02:11851097..11851159 (+ strand)
Length: 63
Type: CDS
Position: Chr02:11851239..11851355 (+ strand)
Length: 117
Type: CDS
Position: Chr02:11852824..11853067 (+ strand)
Length: 244
Type: CDS
Position: Chr02:11853177..11853338 (+ strand)
Length: 162
Type: CDS
Position: Chr02:11853522..11853673 (+ strand)
Length: 152
Type: CDS
Position: Chr02:11853785..11853956 (+ strand)
Length: 172
Type: CDS
Position: Chr02:11853957..11854426 (+ strand)
Length: 470
Type: three_prime_UTR


>Vigan.02G132500.01
TTATGATGGC CTTCATTTCT TTCGCAGTGA GTTTCAGATA AACAAAATCA AGCAGAAGCA GTTTCACTTG ATCCCGCAGA
CGTAGCTCGG GATCAAGAAC TATAGAAAGA GAGAGTTATC AAGAAGAAAA AGATGGGTGA GTGGTTGAGA AATGCAAGGC
CCTATCTGCT GTTATTGGCT GTTCAATTTG GTTCTGCTGG GATGTTCATA TTTGCCATGG ATGCTATAAA GAAGGGTATG
AGCCATTACG TCTTCATTGT CTACCGTAAT GCCATCGCCT CTGTTACTCT CGCTCCCTTC GCCTTTGTTC TTGAAAGGAA
AGTTAGGCCC AAGATGACTT TCAGAGTATT TTCAGAGATT ATGGCACTGG CTTTCTTCGA AATAATACTG GATCAGTGTT
TCGCTCTGTT GGGCATGAAA TTCACGTCTG CTTCTTTCTT ATCTGCTGTC ATGAACTCTG CTCCCTCTAT TACTTTTGTC
ATGGCAGTCA TTCTAGGAAT GGAGCACATG AAAATTAAGG AGGTAGCATG TCAAGCAAAA GTGATTGGCA CCGTAGTAAC
ATTTGGAGGA ACCTTGCTTA TGGCACTGTA CAAAGGCCCC GTCCTCAGTT TCATGAGATC TTCGACCAGC CATGCGAGCC
AAACTGAGAA CGTGACCAAC CCCACTGGCA ACCATTGGGT AATAGGAACA GTGTTCCTCC TCATTGGTTG TGCAGGCTTT
TCTGCATTTT ACATATTACA GGCCATAACA TTGAGAAAAT ACCCAGCAGA GATGTCGTTG GCCACTTGGG TTTGCTTTGT
AGGAGCACTT CAAAGCTCTA TTGTTGCAAT CTTCGCAGAA CGCCACCACC CTCATGCTTG GTCCCTTGGT TGGGACACAC
GACTCTTTGC CCCTGCTTAC GCGGGAATAG TTACATCAGG AGTTCAGTAT TATATACAAG GCATGGTGAT AAAAACCATG
GGTCCAGTTA TTGTGACTGC TTTCAATCCT CTGCGTATGA TCATTGTTAC GGGCTTGGCC TGCATCATCC TATCTGAGCA
ACTCTACCTT GGAAGTATAA TTGGAGCAAT AGTTGTTGTA CTGGGGCTTT ATCTAGTAGT GTGGGGAAAA GCTAAAGAAC
GCAGAGGTCT GACGCCACCA TCTCCTACAG AGGGTAACTT TCCCGAAGAT CAACGACAGC TACCGGTCAC AGCTCCAAGG
AATGATAACG ATGACAATAA GGCTTAAGTA GTGCATGGCC ATAATATAAA AAAGTGACGT GGAAGGCACA ATATAATGAG
ATGAGAAAGT CAGAAAAAAT TAAGTAGGTC TCGGCTATGT CTAATGAGAC ATTGGTGTAG CATTTCCGTA CAACTGGTTT
AATGTCAATG TCATGCAATT TACTCATATA TACCATGAAA TTGGTGGGAC AGGTGTCATG ACCATGCATG AAATTCATCA
TATATATATA TATATATAAT TAGTGGCCCT TTTAGCTCCA TCATTGTTCT ATAGTTGTAT AACTTATTTT CTCCATCATG
GACTAATTTG GATTGCCACT TTTAAGTATT ACATTTCAGG GCTATAAAAG AAATTAACAC CATATAAACT AAAGGTTGCA
GATTCTAATG CAAGTTTAAT CTCCAGCTTC TACTAATATA TCCGGCATCT ATGTCCAACT CATGATTGAT TGAACAAAAT
AACATACTTT TACGAGG

>Vigan.02G132500.01
ATGGGTGAGT GGTTGAGAAA TGCAAGGCCC TATCTGCTGT TATTGGCTGT TCAATTTGGT TCTGCTGGGA TGTTCATATT
TGCCATGGAT GCTATAAAGA AGGGTATGAG CCATTACGTC TTCATTGTCT ACCGTAATGC CATCGCCTCT GTTACTCTCG
CTCCCTTCGC CTTTGTTCTT GAAAGGAAAG TTAGGCCCAA GATGACTTTC AGAGTATTTT CAGAGATTAT GGCACTGGCT
TTCTTCGAAA TAATACTGGA TCAGTGTTTC GCTCTGTTGG GCATGAAATT CACGTCTGCT TCTTTCTTAT CTGCTGTCAT
GAACTCTGCT CCCTCTATTA CTTTTGTCAT GGCAGTCATT CTAGGAATGG AGCACATGAA AATTAAGGAG GTAGCATGTC
AAGCAAAAGT GATTGGCACC GTAGTAACAT TTGGAGGAAC CTTGCTTATG GCACTGTACA AAGGCCCCGT CCTCAGTTTC
ATGAGATCTT CGACCAGCCA TGCGAGCCAA ACTGAGAACG TGACCAACCC CACTGGCAAC CATTGGGTAA TAGGAACAGT
GTTCCTCCTC ATTGGTTGTG CAGGCTTTTC TGCATTTTAC ATATTACAGG CCATAACATT GAGAAAATAC CCAGCAGAGA
TGTCGTTGGC CACTTGGGTT TGCTTTGTAG GAGCACTTCA AAGCTCTATT GTTGCAATCT TCGCAGAACG CCACCACCCT
CATGCTTGGT CCCTTGGTTG GGACACACGA CTCTTTGCCC CTGCTTACGC GGGAATAGTT ACATCAGGAG TTCAGTATTA
TATACAAGGC ATGGTGATAA AAACCATGGG TCCAGTTATT GTGACTGCTT TCAATCCTCT GCGTATGATC ATTGTTACGG
GCTTGGCCTG CATCATCCTA TCTGAGCAAC TCTACCTTGG AAGTATAATT GGAGCAATAG TTGTTGTACT GGGGCTTTAT
CTAGTAGTGT GGGGAAAAGC TAAAGAACGC AGAGGTCTGA CGCCACCATC TCCTACAGAG GGTAACTTTC CCGAAGATCA
ACGACAGCTA CCGGTCACAG CTCCAAGGAA TGATAACGAT GACAATAAGG CTTAA

>Vigan.02G132500.01
MGEWLRNARP YLLLLAVQFG SAGMFIFAMD AIKKGMSHYV FIVYRNAIAS VTLAPFAFVL ERKVRPKMTF RVFSEIMALA
FFEIILDQCF ALLGMKFTSA SFLSAVMNSA PSITFVMAVI LGMEHMKIKE VACQAKVIGT VVTFGGTLLM ALYKGPVLSF
MRSSTSHASQ TENVTNPTGN HWVIGTVFLL IGCAGFSAFY ILQAITLRKY PAEMSLATWV CFVGALQSSI VAIFAERHHP
HAWSLGWDTR LFAPAYAGIV TSGVQYYIQG MVIKTMGPVI VTAFNPLRMI IVTGLACIIL SEQLYLGSII GAIVVVLGLY
LVVWGKAKER RGLTPPSPTE GNFPEDQRQL PVTAPRNDND DNKA*