GBrowse Details

Vigan.02G133600.01

Basic Information:
Name: Vigan.02G133600.01
Multiple alignment
Variant Information
Position: Chr02:11962817..11967920 (- strand)
Length: 5104
Functional Information:
Description: Similar to Uncharacterized protein. [I1MA32, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Drug/metabolite transporter (IPR000620)
Triose-phosphate transporter domain (IPR004853)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:50.68,22.70,33.57,13.12,19.07,40.98,25.00,25.40
Arabidopsis thaliana homolog: AT1G21870.1, AT1G77610.1
Automatic updates:
Name: NM_001253288 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UDP-galactose transporter 1-like (LOC100778350), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:11962817..11963118 (- strand)
Length: 302
Type: three_prime_UTR
Position: Chr02:11963119..11963355 (- strand)
Length: 237
Type: CDS
Position: Chr02:11963837..11964068 (- strand)
Length: 232
Type: CDS
Position: Chr02:11965730..11965937 (- strand)
Length: 208
Type: CDS
Position: Chr02:11966046..11966295 (- strand)
Length: 250
Type: CDS
Position: Chr02:11967471..11967581 (- strand)
Length: 111
Type: CDS
Position: Chr02:11967582..11967920 (- strand)
Length: 339
Type: five_prime_UTR


>Vigan.02G133600.01
GGAGTTTTGA AAAAGCGGGG AATGTTGATT TGTGACAAAA TTGACCCTGA ACCTCGGAGC TGGAATACCG TGGGACCCAC
ATGCCCCACC AACCAAAGCA GAAAGAAACA TAAAATTTCC ATGGCGTGAC AGGGAGAGAG CGAAATCGAA CCGAAACGTT
TCGAAAATTT CTCTGGCATA ATAAAAGGGA GAGAGAGGGA AAGCAGATTG CAGAGAGCAG AAGAGGTGCC TCTTACTCGT
TATACACCGT TACGAGTTCG ACCCTCTTCA TTCTCTTCGT TCTCTTCATT CATATTCTCG TAGCCACAAC ACGTAATAGC
TGCGCCTCTG GAACCGTAGA TGGAAGAGAG TTTCGTTTGC CAGTGGAGCG ATATCAGATC TCTCTTGTCC ATCCTTCAGT
GGTGGGCTTT CAATGTCACC GTAATCATCG TCAACAAGTG GATCTTCCAG AAATTGGATT TCAAGTTTCC CCTATCAGTT
TCAAGCGTCC ACTTTATCTG TTCAGCCATT GGGGGATATG TGGTAATAAA GGTGCTGAAA CTTAAGCCAC TGATAACTGT
TGACCCTGAA GATCGCTGGC GAAGAATCTT TCCAATGTCA TTTGTGTTCT GTATTAACAT CGTGTTAGGG AATGTGAGCC
TACGATACAT TCCAGTTTCT TTTATGCAGA CAATAAAGTC ATTCACACCT GCCACCACAG TTGTTTTGCA ATGGCTAGTG
TGGAGGAAGT ATTTTGACTG GCGTATTTGG GCTTCTCTTG TACCCATTGT TGGAGGGATT CTTCTGACAT CTGTAACAGA
GCTTAGTTTT AACATGTTTG GATTTTGTGC TGCATTATTT GGCTGTCTGG CTACTTCTAC AAAGACTATT CTTGCAGAAT
CTCTTCTGCA TGGATACAAA TTTGACAGCA TAAACACAGT TTATTACATG GCACCTTTTG CAACCATGAT CTTGGCGCTT
CCTGCACTGT TACTTGAAGG CAATGGAATC CTTGAATGGT TTGGTACCCA TCCATATCCT TGGTCGGCTC TCATCATTAT
TTTTAGCTCC GGGGTGTTGG CTTTCTGTCT TAACTTCTCA ATTTTTTACG TGATACACTC CACCACTGCT GTAACATTTA
ATGTTGCCGG AAATCTTAAG GTTGCAGTCG CTGTCCTTGT TTCTTGGCTG ATATTTAGAA ACCCAATTTC ATATTTAAAT
TCTGTTGGAT GTGCCGTGAC TCTTGTGGGC TGTACATTCT ATGGTTATGT GAGGCACATG CTCTCCCAAC AGCCAGCAGT
CCCTGGAACT CCTCGGACCC CCAGGACTCC AAGGACCCCC CGGAATAAGA TGGAGTTGCT TCCTCTTGTA AATGATAAAT
TAGAAGATAA GGTCTAGTAG TTTCTTTAGC TACGCATGAA AGTGGTGTTT CAGCCATTTT TTAAGGCAGT AATAGCAATA
GGTACGAATA CACTAAAGTG ACTACCCGTT ATTTATTGTT AGATTACCCA AAATTATTAA TACAAGTTTC TTTCGTTTTT
CTTCTACTAT CCTACCTCTT CCATCTTTAT CAATTCTCTC TTTTTCCCTT CCCCTCCTAG GGCTCACTTT GTTTTGTCTC
CAGTAGGCCT TTCTATATTT CTCCCGTTTG ATGCCGTGCA CTGTAAAATC TTATTGTTAT TTTCGAAAGT GAATACGTA

>Vigan.02G133600.01
ATGGAAGAGA GTTTCGTTTG CCAGTGGAGC GATATCAGAT CTCTCTTGTC CATCCTTCAG TGGTGGGCTT TCAATGTCAC
CGTAATCATC GTCAACAAGT GGATCTTCCA GAAATTGGAT TTCAAGTTTC CCCTATCAGT TTCAAGCGTC CACTTTATCT
GTTCAGCCAT TGGGGGATAT GTGGTAATAA AGGTGCTGAA ACTTAAGCCA CTGATAACTG TTGACCCTGA AGATCGCTGG
CGAAGAATCT TTCCAATGTC ATTTGTGTTC TGTATTAACA TCGTGTTAGG GAATGTGAGC CTACGATACA TTCCAGTTTC
TTTTATGCAG ACAATAAAGT CATTCACACC TGCCACCACA GTTGTTTTGC AATGGCTAGT GTGGAGGAAG TATTTTGACT
GGCGTATTTG GGCTTCTCTT GTACCCATTG TTGGAGGGAT TCTTCTGACA TCTGTAACAG AGCTTAGTTT TAACATGTTT
GGATTTTGTG CTGCATTATT TGGCTGTCTG GCTACTTCTA CAAAGACTAT TCTTGCAGAA TCTCTTCTGC ATGGATACAA
ATTTGACAGC ATAAACACAG TTTATTACAT GGCACCTTTT GCAACCATGA TCTTGGCGCT TCCTGCACTG TTACTTGAAG
GCAATGGAAT CCTTGAATGG TTTGGTACCC ATCCATATCC TTGGTCGGCT CTCATCATTA TTTTTAGCTC CGGGGTGTTG
GCTTTCTGTC TTAACTTCTC AATTTTTTAC GTGATACACT CCACCACTGC TGTAACATTT AATGTTGCCG GAAATCTTAA
GGTTGCAGTC GCTGTCCTTG TTTCTTGGCT GATATTTAGA AACCCAATTT CATATTTAAA TTCTGTTGGA TGTGCCGTGA
CTCTTGTGGG CTGTACATTC TATGGTTATG TGAGGCACAT GCTCTCCCAA CAGCCAGCAG TCCCTGGAAC TCCTCGGACC
CCCAGGACTC CAAGGACCCC CCGGAATAAG ATGGAGTTGC TTCCTCTTGT AAATGATAAA TTAGAAGATA AGGTCTAG

>Vigan.02G133600.01
MEESFVCQWS DIRSLLSILQ WWAFNVTVII VNKWIFQKLD FKFPLSVSSV HFICSAIGGY VVIKVLKLKP LITVDPEDRW
RRIFPMSFVF CINIVLGNVS LRYIPVSFMQ TIKSFTPATT VVLQWLVWRK YFDWRIWASL VPIVGGILLT SVTELSFNMF
GFCAALFGCL ATSTKTILAE SLLHGYKFDS INTVYYMAPF ATMILALPAL LLEGNGILEW FGTHPYPWSA LIIIFSSGVL
AFCLNFSIFY VIHSTTAVTF NVAGNLKVAV AVLVSWLIFR NPISYLNSVG CAVTLVGCTF YGYVRHMLSQ QPAVPGTPRT
PRTPRTPRNK MELLPLVNDK LEDKV*