GBrowse Details

Vigan.02G134700.01

Basic Information:
Name: Vigan.02G134700.01
Multiple alignment
Variant Information
Position: Chr02:12061937..12064347 (- strand)
Length: 2411
Functional Information:
Description: Similar to Uncharacterized protein. [I1KAA0, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: TRAM/LAG1/CLN8 homology domain (IPR006634)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.80,20.74,12.83,16.68,8.16,18.90,12.33,9.59
Arabidopsis thaliana homolog: AT1G21790.1
Automatic updates:
Name: NM_001255647 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TLC domain-containing protein 2-like (LOC100806828), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12061937..12062316 (- strand)
Length: 380
Type: three_prime_UTR
Position: Chr02:12062317..12062634 (- strand)
Length: 318
Type: CDS
Position: Chr02:12063065..12063342 (- strand)
Length: 278
Type: CDS
Position: Chr02:12063950..12064199 (- strand)
Length: 250
Type: CDS
Position: Chr02:12064200..12064347 (- strand)
Length: 148
Type: five_prime_UTR


>Vigan.02G134700.01
CGATACCATT CCTTGGATTC AACCAATTAA GACAAATTTA TTATTGCAGT TGATTGAGAG GACTGAAGAT CAGGGAAGAG
GACCAAATAA AAGTAGCGCC TTGTTTGGTT GGATGGAATA ACGATAAGAA GAAGAAGCAA AAGCAGCAAT GGCAATGGAT
GGAGGAAAGC GGAATGCGGT GGAGAAGTTA TTCTTTGCGA CTCTACTTCT CTGGTTAGGC TCCGTTTGTT TTGAGATTTT
GTTGAATCAG CGGTGGGAGC TTCTATCAGT CATAGCGGGT TCAATCTTCT ATCAGACATC TAATAGCATC ATCCGATTCT
TCTTCTCCGC AGATAAAGAT CCTCTCTTCG TTAACACTTC CGTCTCTCTT CTCCACTCTC TCTTCACTTC CGCTTCAGTG
ATCTTCATCT TGTTCAGAGA GTTGTTAGGT ACTGGGCCAA GTGGAATGTT TGACCACTCA CAGTTGGTTG AACATACTTG
GCCTTGGGCT TTTGAAGCAT TGAGCTTCTC ATGTGGTTAC TTTGCGTATG ATCAGTGGGA TATGCTTCAT TATCGCTTGT
ATAATGGTTG GATCCCCTCT ATCCTTGTGC ATCATCTGGT TCTCCTTATC TGCTTCACTC TTGCTTTGTA TCGAAATGTT
ACCATCAACT ACCTTATTCT CACTCTTATC TGTGAGCTGC ATTCCATCTT TCTGCATGTG AGAAAAGTGA GACGAATGGC
CGGTATTCGG GATGCAAAGA GCATTCATGT TAAGTTAGAA TGGTTTCTGA ATTGGGTCAC CTTCTGTGTG GCAAGATCTG
TACCTCACAT TCTCATCACA GCCAAGCTCA TGAAGGATGC TCACAAATTT CAAAAGGGTG TAGAGCTACC ACTGGCTCTG
TTGGGCATGG CTGGGATGAA TTTGCTCAAC ATTGGTCTTG GTATGGATCT TCTCAAAGCC TTTAAGAGAG AAAGGAAGTC
CCAGCAGCGA AATCTTCATG ACCACCGTGA ATGAGAAAAA AAGTACAATA CAGTGCTCTT TCTGGTGTAT GTACAACAAT
CTTTAATCTT CAGCTGAAGT GAAAAGACGG AAGGAATTGG TGCAGCATGC ATGGAGAGGA TTGAGTATGA ATATGTTCAG
CCTCTTAGTT TTTAAATACA ACACAAATAG ATTATTTGTA ATTTCCTCTA AAAGTTATTT GGAAGCATCA ACAATGTATC
CTGGTAAGTT GCCATTTATC ATCCCCTCCT TAGATTTAGA CACACGAGTT TAGCATAGTA TTTATTTTTT TTCTGAAAAT
TTGTATAAGG CCTAATGTCA TTTTTGTCCA GTTTGTTTTG GTGTTTTGGT ACATTTAATT TTAAAAGTCT TAACATGATA
ATTGACGTAT CCGT

>Vigan.02G134700.01
ATGGCAATGG ATGGAGGAAA GCGGAATGCG GTGGAGAAGT TATTCTTTGC GACTCTACTT CTCTGGTTAG GCTCCGTTTG
TTTTGAGATT TTGTTGAATC AGCGGTGGGA GCTTCTATCA GTCATAGCGG GTTCAATCTT CTATCAGACA TCTAATAGCA
TCATCCGATT CTTCTTCTCC GCAGATAAAG ATCCTCTCTT CGTTAACACT TCCGTCTCTC TTCTCCACTC TCTCTTCACT
TCCGCTTCAG TGATCTTCAT CTTGTTCAGA GAGTTGTTAG GTACTGGGCC AAGTGGAATG TTTGACCACT CACAGTTGGT
TGAACATACT TGGCCTTGGG CTTTTGAAGC ATTGAGCTTC TCATGTGGTT ACTTTGCGTA TGATCAGTGG GATATGCTTC
ATTATCGCTT GTATAATGGT TGGATCCCCT CTATCCTTGT GCATCATCTG GTTCTCCTTA TCTGCTTCAC TCTTGCTTTG
TATCGAAATG TTACCATCAA CTACCTTATT CTCACTCTTA TCTGTGAGCT GCATTCCATC TTTCTGCATG TGAGAAAAGT
GAGACGAATG GCCGGTATTC GGGATGCAAA GAGCATTCAT GTTAAGTTAG AATGGTTTCT GAATTGGGTC ACCTTCTGTG
TGGCAAGATC TGTACCTCAC ATTCTCATCA CAGCCAAGCT CATGAAGGAT GCTCACAAAT TTCAAAAGGG TGTAGAGCTA
CCACTGGCTC TGTTGGGCAT GGCTGGGATG AATTTGCTCA ACATTGGTCT TGGTATGGAT CTTCTCAAAG CCTTTAAGAG
AGAAAGGAAG TCCCAGCAGC GAAATCTTCA TGACCACCGT GAATGA

>Vigan.02G134700.01
MAMDGGKRNA VEKLFFATLL LWLGSVCFEI LLNQRWELLS VIAGSIFYQT SNSIIRFFFS ADKDPLFVNT SVSLLHSLFT
SASVIFILFR ELLGTGPSGM FDHSQLVEHT WPWAFEALSF SCGYFAYDQW DMLHYRLYNG WIPSILVHHL VLLICFTLAL
YRNVTINYLI LTLICELHSI FLHVRKVRRM AGIRDAKSIH VKLEWFLNWV TFCVARSVPH ILITAKLMKD AHKFQKGVEL
PLALLGMAGM NLLNIGLGMD LLKAFKRERK SQQRNLHDHR E*