GBrowse Details

Vigan.02G137400.01

Basic Information:
Name: Vigan.02G137400.01
Multiple alignment
Variant Information
Position: Chr02:12298674..12307685 (+ strand)
Length: 9012
Functional Information:
Description: Similar to Delta-aminolevulinic acid dehydratase. [V5N8K3, Phaseolus vulgaris]
GO: Biological Process: tetrapyrrole biosynthetic process (GO:0033014)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: porphobilinogen synthase activity (GO:0004655)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Porphobilinogen synthase (IPR001731)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.89,19.62,34.96,85.68,9.76,29.16,16.31,20.75
Arabidopsis thaliana homolog: AT1G69740.1
Automatic updates:
Name: NM_001251808 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aminolevulinate, delta-, dehydratase (HEMB), mRNA; nuclear gene for chloroplast product.
PubMed ID: 8016269 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:12298674..12298909 (+ strand)
Length: 236
Type: five_prime_UTR
Position: Chr02:12298910..12299170 (+ strand)
Length: 261
Type: CDS
Position: Chr02:12299269..12299380 (+ strand)
Length: 112
Type: CDS
Position: Chr02:12299735..12299808 (+ strand)
Length: 74
Type: CDS
Position: Chr02:12300622..12300690 (+ strand)
Length: 69
Type: CDS
Position: Chr02:12300773..12300856 (+ strand)
Length: 84
Type: CDS
Position: Chr02:12300951..12301020 (+ strand)
Length: 70
Type: CDS
Position: Chr02:12303564..12303619 (+ strand)
Length: 56
Type: CDS
Position: Chr02:12303987..12304108 (+ strand)
Length: 122
Type: CDS
Position: Chr02:12305123..12305194 (+ strand)
Length: 72
Type: CDS
Position: Chr02:12305293..12305374 (+ strand)
Length: 82
Type: CDS
Position: Chr02:12305464..12305541 (+ strand)
Length: 78
Type: CDS
Position: Chr02:12307078..12307245 (+ strand)
Length: 168
Type: CDS
Position: Chr02:12307246..12307685 (+ strand)
Length: 440
Type: three_prime_UTR


>Vigan.02G137400.01
ATTTCATCTA AGAGAAGTAT TGAATCCTGT ACGTACGTCC TCACTTATCC TCTTTCTGCG ACTCTCTTCT CATTGGTTAT
CTGTATTCTC TCCCCATCCT GTAGATCCAA ATTTCCTTTT CCTTCTTCAC TCCCAATCCC ATTCTTCAAG CTTCGCCAGA
GAAACTCTAA TATCTTTCAA GCAATCTAAA GTTAAAGGCG CCAAAACCTT CAATCGATAA TTCTAGGCGT TCTATAATGC
AATCAATGGC TGCTTCAATC ACTAATGCGC CATCCGCGGT CAATTGCCCG AGCTATGTCG GTCTCCGAGC GCCGCAGAGG
ACCTTCAACT TATGCGTTCC TCAACATGCC ACGAAGTCGT TCCCTCCGCG CCTTTTCGTC GTGAGAGCGA GCGATTCCGA
GTTCGAGGCC GCCGTTGTCG CTGGAAAGGT TCCGTCGGCG CCTCCCGTGC CGCCTAAACC GGCGGCTCCG GTTGGGACTC
CGGTTGTCCC TTCGCTTCCA CTTCATCGGC GTCCTCGTCG GAACCGGAAG TCGCCTGCGC TTCGGTCGGC TTTTCAGGAA
ACTAGTATTT CGCCGGCGAA TTTTGTGTAT CCGCTCTTCA TCCACGAAGG CGAAGAAGAT ACTCCAATCG GAGCTATGCC
TGGATGCTAC AGGCTTGGAT GGAGGCATGG ACTTGTACAA GAGGTTGCAA AAGCACGGGA TGTTGGTGTT AATAGTATTG
TGCTCTTCCC CAAAATTCCA GATGCTTTGA AGTCTCCCAC AGGAGATGAA GCATACAATG AAAATGGTTT AGTGCCTCGG
ACAATTCGTT TGCTCAAGGA TAAGTACCCA GACCTTGTTA TCTATACGGA TGTTGCATTA GATCCTTATT CATCAGATGG
GCATGATGGC ATAGTTAGAG AAGATGGAGT TATTATGAAT GACGAAACAG TTCATCAATT ATGTAAACAA GCTGTAGCCC
AGGCCCAAGC TGGAGCAGAT GTTGTCAGTC CTAGTGATAT GATGGATGGT CGGGTAGGAG CATTGCGTGC AGCTCTTGAT
GCTGAAGGCT TTCAGCATGT TTCTATAATG TCCTATACGG CAAAGTATGC AAGTTCTTTC TACGGTCCAT TTAGAGAGGC
ACTAGATTCC AATCCCCGGT TCGGAGACAA GAAAACTTAT CAGATGAACC CAGCTAACTA CAGAGAAGCT CTGACTGAGA
TGCGGGAGGA TGAATCTGAA GGAGCTGACA TTCTCTTGGT AAAGCCTGGT CTTCCTTACT TGGATATCAT AAGGCTGCTC
AGGGATAATT CTCCTTTGCC AATTGCAGCA TACCAGGTTT CTGGGGAATA CGCAATGATA AAGGCTGCTG GTGCTCTCAA
AATGATAGAC GAAGAAAAAG TTATGATGGA GTCACTGATG TGCCTCCGAA GGGCCGGTGC TGATATCCTC CTCACATATT
CTGCTCTGCA AGCTGCCAGA TGTTTGTGTG GAGAGAAGAG GTGAGAGATT CTCCAATCAC GTAAGGCATT GTTCACAGAG
AGACAGATGA GATTCTCTAA TTATGTGGAA GGCTGAAGAG ATTTCCTAAT ACCAGCATGT TAAGCTGGAA TTTTGTCAGT
TGTCAATTGT TTAAGAATGA CATTGGGGTA TGTGTATAGA GAGACACATT CGTAATAAAA TATTATGGTG TGGTTTCATT
TTTTATTCTA ACTTCGGGTA ACGTAACGCA TGAATGCACC TGTGTACTCG CCTACTGAAT ATTGTAGTAA AAACGTGGGG
ATGGTAAAAC CCAATTGGCA AACCGACCCA TCTTTAGTGT GACTGGTAAA ACGGGCCCAA AGCATAATGG GGGCAGTTTG
GAAGGAAATA GGCCAGGCCC AAGGAGAAAA AAAAAGTGTT GTTTCCTTTG CCACCCAACA AATGCTTTCT CGTTTCACTT
TCAA

>Vigan.02G137400.01
ATGCAATCAA TGGCTGCTTC AATCACTAAT GCGCCATCCG CGGTCAATTG CCCGAGCTAT GTCGGTCTCC GAGCGCCGCA
GAGGACCTTC AACTTATGCG TTCCTCAACA TGCCACGAAG TCGTTCCCTC CGCGCCTTTT CGTCGTGAGA GCGAGCGATT
CCGAGTTCGA GGCCGCCGTT GTCGCTGGAA AGGTTCCGTC GGCGCCTCCC GTGCCGCCTA AACCGGCGGC TCCGGTTGGG
ACTCCGGTTG TCCCTTCGCT TCCACTTCAT CGGCGTCCTC GTCGGAACCG GAAGTCGCCT GCGCTTCGGT CGGCTTTTCA
GGAAACTAGT ATTTCGCCGG CGAATTTTGT GTATCCGCTC TTCATCCACG AAGGCGAAGA AGATACTCCA ATCGGAGCTA
TGCCTGGATG CTACAGGCTT GGATGGAGGC ATGGACTTGT ACAAGAGGTT GCAAAAGCAC GGGATGTTGG TGTTAATAGT
ATTGTGCTCT TCCCCAAAAT TCCAGATGCT TTGAAGTCTC CCACAGGAGA TGAAGCATAC AATGAAAATG GTTTAGTGCC
TCGGACAATT CGTTTGCTCA AGGATAAGTA CCCAGACCTT GTTATCTATA CGGATGTTGC ATTAGATCCT TATTCATCAG
ATGGGCATGA TGGCATAGTT AGAGAAGATG GAGTTATTAT GAATGACGAA ACAGTTCATC AATTATGTAA ACAAGCTGTA
GCCCAGGCCC AAGCTGGAGC AGATGTTGTC AGTCCTAGTG ATATGATGGA TGGTCGGGTA GGAGCATTGC GTGCAGCTCT
TGATGCTGAA GGCTTTCAGC ATGTTTCTAT AATGTCCTAT ACGGCAAAGT ATGCAAGTTC TTTCTACGGT CCATTTAGAG
AGGCACTAGA TTCCAATCCC CGGTTCGGAG ACAAGAAAAC TTATCAGATG AACCCAGCTA ACTACAGAGA AGCTCTGACT
GAGATGCGGG AGGATGAATC TGAAGGAGCT GACATTCTCT TGGTAAAGCC TGGTCTTCCT TACTTGGATA TCATAAGGCT
GCTCAGGGAT AATTCTCCTT TGCCAATTGC AGCATACCAG GTTTCTGGGG AATACGCAAT GATAAAGGCT GCTGGTGCTC
TCAAAATGAT AGACGAAGAA AAAGTTATGA TGGAGTCACT GATGTGCCTC CGAAGGGCCG GTGCTGATAT CCTCCTCACA
TATTCTGCTC TGCAAGCTGC CAGATGTTTG TGTGGAGAGA AGAGGTGA

>Vigan.02G137400.01
MQSMAASITN APSAVNCPSY VGLRAPQRTF NLCVPQHATK SFPPRLFVVR ASDSEFEAAV VAGKVPSAPP VPPKPAAPVG
TPVVPSLPLH RRPRRNRKSP ALRSAFQETS ISPANFVYPL FIHEGEEDTP IGAMPGCYRL GWRHGLVQEV AKARDVGVNS
IVLFPKIPDA LKSPTGDEAY NENGLVPRTI RLLKDKYPDL VIYTDVALDP YSSDGHDGIV REDGVIMNDE TVHQLCKQAV
AQAQAGADVV SPSDMMDGRV GALRAALDAE GFQHVSIMSY TAKYASSFYG PFREALDSNP RFGDKKTYQM NPANYREALT
EMREDESEGA DILLVKPGLP YLDIIRLLRD NSPLPIAAYQ VSGEYAMIKA AGALKMIDEE KVMMESLMCL RRAGADILLT
YSALQAARCL CGEKR*