GBrowse Details

Vigan.02G141200.01

Basic Information:
Name: Vigan.02G141200.01
Multiple alignment
Variant Information
Position: Chr02:12802547..12805631 (+ strand)
Length: 3085
Functional Information:
Description: Similar to MADS box protein PIb. [Q533S4, Lotus japonicus]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.00,33.52,0.00,0.00,0.00,0.08,0.34
Automatic updates:
Name: NM_001249313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306010 (LOC100306010), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12802547..12802726 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr02:12802727..12802914 (+ strand)
Length: 188
Type: CDS
Position: Chr02:12803073..12803139 (+ strand)
Length: 67
Type: CDS
Position: Chr02:12803698..12803759 (+ strand)
Length: 62
Type: CDS
Position: Chr02:12803864..12803963 (+ strand)
Length: 100
Type: CDS
Position: Chr02:12804062..12804091 (+ strand)
Length: 30
Type: CDS
Position: Chr02:12804317..12804361 (+ strand)
Length: 45
Type: CDS
Position: Chr02:12805376..12805429 (+ strand)
Length: 54
Type: CDS
Position: Chr02:12805430..12805631 (+ strand)
Length: 202
Type: three_prime_UTR


>Vigan.02G141200.01
CTCAGAAAGT TGTTCATCCA CAAACCCATA ATGGAATGTT CCGGTATTAC TTTTCTTGGT GCTTGTTATA TACCCTCTTT
ATCTCCCCAC TTCTTCATTC ACTGAAGTTA TAAGAAACAA AAGGAATACA TAGAAAATAA AGGAGAAGGT AAGAAGAGAA
AGGTTGTGAG TTTGTGAGAG ATGGGGAGGG GTAAGATTGA GATCAAAAGG ATTGAGAACT CAAGCAACAG GCAAGTTACA
TATTCAAAGA GGAAGAATGG GATCCTTAAG AAGGCAAAGG AAATTAGTGT TCTATGCGAT GCTCAAGTTT CCCTTATCAT
CTTTGGTGCC TCTGGAAAGA TGCACGAATA CATCAGCCCC TCCACCACGC TGATTGACAT CCTAGACAGA TACCAAAGAG
CCTCTGGGAA GACCCTCTGG GACGCCAAGC ATGAGAACCT CAGCAATGAA ATTGATAGAC TCAAAAAAGA GAATGACAGC
ATGCAAATTG AGCTCAGGCA CTTGAAAGGG GAAGACATTA CGTCACTGAA TTACAAGGAA CTGATGGCTC TAGAGGATGC
CCTTGAAAAT GGCCTCAATG GTGTCCGTGA GAAAAAGGTG GAAGTGCACA GGATGTTCAA GAGAAATGGC AAGATTTTGG
AGGAGCAAAA TAAGGAACTC AATTTCCTTC TGCAGCAACA TTTGGCATTA GAAAGCGTGG GAAACATGCA TGGACAGTGG
ATTTGACAGA CAATATATCA TAATTATAAA GGGATTTCCT ATATATATAT AATGTAGATT AATGGCTGCT GTTGTCAAAT
TAATTCTGCT CAAAGCCTTG TATAACTTAT ATAATTTCCT ATTTCCACCT ATTATTATAA TAGTTCATTG TAGACTCTGA
AACTTGTTAT ACCATGATGA TTGAATATTA TATATGAAAC TATTAATT

>Vigan.02G141200.01
ATGGGGAGGG GTAAGATTGA GATCAAAAGG ATTGAGAACT CAAGCAACAG GCAAGTTACA TATTCAAAGA GGAAGAATGG
GATCCTTAAG AAGGCAAAGG AAATTAGTGT TCTATGCGAT GCTCAAGTTT CCCTTATCAT CTTTGGTGCC TCTGGAAAGA
TGCACGAATA CATCAGCCCC TCCACCACGC TGATTGACAT CCTAGACAGA TACCAAAGAG CCTCTGGGAA GACCCTCTGG
GACGCCAAGC ATGAGAACCT CAGCAATGAA ATTGATAGAC TCAAAAAAGA GAATGACAGC ATGCAAATTG AGCTCAGGCA
CTTGAAAGGG GAAGACATTA CGTCACTGAA TTACAAGGAA CTGATGGCTC TAGAGGATGC CCTTGAAAAT GGCCTCAATG
GTGTCCGTGA GAAAAAGGTG GAAGTGCACA GGATGTTCAA GAGAAATGGC AAGATTTTGG AGGAGCAAAA TAAGGAACTC
AATTTCCTTC TGCAGCAACA TTTGGCATTA GAAAGCGTGG GAAACATGCA TGGACAGTGG ATTTGA

>Vigan.02G141200.01
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGA SGKMHEYISP STTLIDILDR YQRASGKTLW
DAKHENLSNE IDRLKKENDS MQIELRHLKG EDITSLNYKE LMALEDALEN GLNGVREKKV EVHRMFKRNG KILEEQNKEL
NFLLQQHLAL ESVGNMHGQW I*