GBrowse Details

Vigan.02G142000.01

Basic Information:
Name: Vigan.02G142000.01
Multiple alignment
Variant Information
Position: Chr02:12906692..12913808 (+ strand)
Length: 7117
Functional Information:
Description: Similar to UDP-sugar pyrophosphorylase 1. [Q09WE7, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: nucleotidyltransferase activity (GO:0016779)
InterPro: UTP--glucose-1-phosphate uridylyltransferase (IPR002618)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.04,19.15,11.43,12.10,11.68,12.82,9.54,13.40
Arabidopsis thaliana homolog: AT5G52560.1
Automatic updates:
Name: NM_001250505 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UDP-sugar pyrophosphorylase (USP1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12906692..12906831 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr02:12906832..12906879 (+ strand)
Length: 48
Type: CDS
Position: Chr02:12906969..12907073 (+ strand)
Length: 105
Type: CDS
Position: Chr02:12907160..12907276 (+ strand)
Length: 117
Type: CDS
Position: Chr02:12907421..12907561 (+ strand)
Length: 141
Type: CDS
Position: Chr02:12907850..12907940 (+ strand)
Length: 91
Type: CDS
Position: Chr02:12908315..12908442 (+ strand)
Length: 128
Type: CDS
Position: Chr02:12908808..12908879 (+ strand)
Length: 72
Type: CDS
Position: Chr02:12909019..12909083 (+ strand)
Length: 65
Type: CDS
Position: Chr02:12909380..12909440 (+ strand)
Length: 61
Type: CDS
Position: Chr02:12909539..12909656 (+ strand)
Length: 118
Type: CDS
Position: Chr02:12910525..12910649 (+ strand)
Length: 125
Type: CDS
Position: Chr02:12910882..12910958 (+ strand)
Length: 77
Type: CDS
Position: Chr02:12911276..12911381 (+ strand)
Length: 106
Type: CDS
Position: Chr02:12911560..12911619 (+ strand)
Length: 60
Type: CDS
Position: Chr02:12911903..12911983 (+ strand)
Length: 81
Type: CDS
Position: Chr02:12912434..12912673 (+ strand)
Length: 240
Type: CDS
Position: Chr02:12913280..12913447 (+ strand)
Length: 168
Type: CDS
Position: Chr02:12913448..12913808 (+ strand)
Length: 361
Type: three_prime_UTR


>Vigan.02G142000.01
AAATAAATAA AATAAATGTC ACACAACAAA ATCCTAAGAA TATAAAACAA TAGAATTTGC ATTTATTTTC ATGTTTGTTG
TGTTCTTCTG TCTCCACGCA CCACCACCTT CCCCTGCCAC TCTCTTCTTC TTCTCCAGCC ATGGCTACCT CCCTCGGCGA
GAACCTCAAC CTTCTTTCTA CTCAACAGCA AGAGTTGGTG AAGATGCTGT TGGAGAACGG CCAAGACCAC CTGTTTCGAG
ATTGGCCTCC TCCCGGCGTC GACGACGACC ACAAGAAAGC GTTCTTCGAT CAGTTGACTC TACTCGATTC GAGTTACCCT
GGCGGTTTGG AATCATACAT CAAAAACGCT AAACGGCTCT TGGCCGATTC TAAGGCTGGC AAAAACCCTT ACGATGGTTT
CACTCCTTCC GTTCCAACGG GTGAGACTTT GACTTTTGGC GATGAGAATT ACATCAACTT TGAGGAAACA GGTGTGCGTG
AGGCTCGGAA AGCTGCATTT GTTCTTGTTG CTGGTGGTCT TGGTGAGCGT TTAGGATACA GTGGGATTAA GGTTGCTCTT
CCTGCAGAAA CCACTACTGG AACATGTTTC ATTCAGCATT ATATTGAATC TATATTGGCT CTTCAAGAAG CCAGCTCACA
AGGTGAATCC CAAACTAAGA TTCCTCTTGT TATTATGACA TCTGATGACA CTCATGGACG CACTTTAGAG CTATTAGAAT
CAAATTCTTA TTTTGGTATG CAACCCACAC AAGTAACACT TTTAAAGCAG GAAAAAGTTG CATGCTTAGA AGATAATGAT
GCCAGGCTTG CACTGGAACC ACAAAACAAG TACAAAATTC AGACAAAACC TCATGGGCAT GGTGATGTGC ATTCACTTCT
TTATTCAAGC GGGATTCTCA AAGTATGGTA TGATGCTGGG TTGAAATGGG TTCTATTTTT TCAAGATACA AATGGGCTTC
TGTTCAAGGC AATTCCAGCA GCACTGGGTG TCAGTGCTTC CAAACAGTAC CATGTTAACT CTCTTGCGGT ACCTCGGAAA
GCAAAAGAAG CTATTGGTGG AATCACCCGA CTCACTCACT CTGATGGAAG GTCTATGGTG ATAAATGTGG AGTACAATCA
GCTAGATCCT CTTCTCAGAG CAAGTGGATA CCCTGAAGGC GATGTAAATT GTGAGACTGG CTTCTCCCCA TTTCCTGGCA
ATATTAACCA ATTGATTTTA GGGCTGGGTC CTTACATTGA AGAGCTCTCT AAAACAGGAG GTGCCATACA GGAGTTCGTT
AACCCAAAAT ATAAAGATGC CAGCAAAACT TCATTTAAGT CCTCAACTCG ACTTGAATGT ATGATGCAAG ACTATCCAAA
AACATTGTCC CCATCTGCCA GGGTTGGGTT CACGGTGATG GAAACATGGC TTGCTTATGC ACCTGTGAAG AATAATGCTG
AGGATGCTGC TAAGGTACCG AAGGGAAATC CATACCATAG TGCAACCTCT GGAGAAATGG CAATCTATCG TGCAAATAGC
ATTATTCTCA AAAAGGCCGG TGTCCAAGTA GCAGAGCCAG TTGTGCAGGT GTTCAATGGC CAAGAGGTTG AAGTTTGGCC
TCGCGTCACG TGGAAACCCA AATGGGGTCT AACTTTTTCT CGGATTAAGA GCAAAGTCAG TGGAAATTGC TCCATTTCCC
AAAGGTCTAC ACTGGCCATC AAGGGTCAAA ATATTTTTAT TGAAAATCTG TCGTTAGATG GGGCTCTCAT CATTGATGCT
GTGGATGATG CAGAGGTAAA CGTGAGTGGT TCAGTTCAAA ACAACGGTTG GATCCTTGAA ACTGTTGATT ACAAAGATAC
GACGGAGCCT GAGGTATTGA GAATCAGGGG TTTTAAATTT AACAAAACTG AGCAGCTGGA AACGAAATAC TCTGAGCCAG
GAAAATTTCA CTTGAAGGCT TGAAAATACA TGCTCTGGCA AACAAGTTTT AGCTCTCATG CTACATCCAC TATTATTTTT
CTCTACTGTA ACGTGTGCTT GCACTCTTTG GTTCTTGTGT CATAATCAGT GGCATAGGAA GTCTTGCAGA GTTTATCTCC
CTTCTCCTAG CCTTTGGTGC ACTATTTTGT TCATAAGTTT TGTCCCCACT TAGATAAGAG AAACTATTTT ACATTCCTGG
TTCAAATTGT AAAGAATCTG ACTCCATTTT TATTGATGTG ATAGAAATTT ATGCAGATTC ATTATGTGTC CATATGAGAC
TGGTTGATGT GAATCTAATA ATGTGCCAAC AAGAAGTTTA GCCATCCAAT TATCTCAGTC TATG

>Vigan.02G142000.01
ATGGCTACCT CCCTCGGCGA GAACCTCAAC CTTCTTTCTA CTCAACAGCA AGAGTTGGTG AAGATGCTGT TGGAGAACGG
CCAAGACCAC CTGTTTCGAG ATTGGCCTCC TCCCGGCGTC GACGACGACC ACAAGAAAGC GTTCTTCGAT CAGTTGACTC
TACTCGATTC GAGTTACCCT GGCGGTTTGG AATCATACAT CAAAAACGCT AAACGGCTCT TGGCCGATTC TAAGGCTGGC
AAAAACCCTT ACGATGGTTT CACTCCTTCC GTTCCAACGG GTGAGACTTT GACTTTTGGC GATGAGAATT ACATCAACTT
TGAGGAAACA GGTGTGCGTG AGGCTCGGAA AGCTGCATTT GTTCTTGTTG CTGGTGGTCT TGGTGAGCGT TTAGGATACA
GTGGGATTAA GGTTGCTCTT CCTGCAGAAA CCACTACTGG AACATGTTTC ATTCAGCATT ATATTGAATC TATATTGGCT
CTTCAAGAAG CCAGCTCACA AGGTGAATCC CAAACTAAGA TTCCTCTTGT TATTATGACA TCTGATGACA CTCATGGACG
CACTTTAGAG CTATTAGAAT CAAATTCTTA TTTTGGTATG CAACCCACAC AAGTAACACT TTTAAAGCAG GAAAAAGTTG
CATGCTTAGA AGATAATGAT GCCAGGCTTG CACTGGAACC ACAAAACAAG TACAAAATTC AGACAAAACC TCATGGGCAT
GGTGATGTGC ATTCACTTCT TTATTCAAGC GGGATTCTCA AAGTATGGTA TGATGCTGGG TTGAAATGGG TTCTATTTTT
TCAAGATACA AATGGGCTTC TGTTCAAGGC AATTCCAGCA GCACTGGGTG TCAGTGCTTC CAAACAGTAC CATGTTAACT
CTCTTGCGGT ACCTCGGAAA GCAAAAGAAG CTATTGGTGG AATCACCCGA CTCACTCACT CTGATGGAAG GTCTATGGTG
ATAAATGTGG AGTACAATCA GCTAGATCCT CTTCTCAGAG CAAGTGGATA CCCTGAAGGC GATGTAAATT GTGAGACTGG
CTTCTCCCCA TTTCCTGGCA ATATTAACCA ATTGATTTTA GGGCTGGGTC CTTACATTGA AGAGCTCTCT AAAACAGGAG
GTGCCATACA GGAGTTCGTT AACCCAAAAT ATAAAGATGC CAGCAAAACT TCATTTAAGT CCTCAACTCG ACTTGAATGT
ATGATGCAAG ACTATCCAAA AACATTGTCC CCATCTGCCA GGGTTGGGTT CACGGTGATG GAAACATGGC TTGCTTATGC
ACCTGTGAAG AATAATGCTG AGGATGCTGC TAAGGTACCG AAGGGAAATC CATACCATAG TGCAACCTCT GGAGAAATGG
CAATCTATCG TGCAAATAGC ATTATTCTCA AAAAGGCCGG TGTCCAAGTA GCAGAGCCAG TTGTGCAGGT GTTCAATGGC
CAAGAGGTTG AAGTTTGGCC TCGCGTCACG TGGAAACCCA AATGGGGTCT AACTTTTTCT CGGATTAAGA GCAAAGTCAG
TGGAAATTGC TCCATTTCCC AAAGGTCTAC ACTGGCCATC AAGGGTCAAA ATATTTTTAT TGAAAATCTG TCGTTAGATG
GGGCTCTCAT CATTGATGCT GTGGATGATG CAGAGGTAAA CGTGAGTGGT TCAGTTCAAA ACAACGGTTG GATCCTTGAA
ACTGTTGATT ACAAAGATAC GACGGAGCCT GAGGTATTGA GAATCAGGGG TTTTAAATTT AACAAAACTG AGCAGCTGGA
AACGAAATAC TCTGAGCCAG GAAAATTTCA CTTGAAGGCT TGA

>Vigan.02G142000.01
MATSLGENLN LLSTQQQELV KMLLENGQDH LFRDWPPPGV DDDHKKAFFD QLTLLDSSYP GGLESYIKNA KRLLADSKAG
KNPYDGFTPS VPTGETLTFG DENYINFEET GVREARKAAF VLVAGGLGER LGYSGIKVAL PAETTTGTCF IQHYIESILA
LQEASSQGES QTKIPLVIMT SDDTHGRTLE LLESNSYFGM QPTQVTLLKQ EKVACLEDND ARLALEPQNK YKIQTKPHGH
GDVHSLLYSS GILKVWYDAG LKWVLFFQDT NGLLFKAIPA ALGVSASKQY HVNSLAVPRK AKEAIGGITR LTHSDGRSMV
INVEYNQLDP LLRASGYPEG DVNCETGFSP FPGNINQLIL GLGPYIEELS KTGGAIQEFV NPKYKDASKT SFKSSTRLEC
MMQDYPKTLS PSARVGFTVM ETWLAYAPVK NNAEDAAKVP KGNPYHSATS GEMAIYRANS IILKKAGVQV AEPVVQVFNG
QEVEVWPRVT WKPKWGLTFS RIKSKVSGNC SISQRSTLAI KGQNIFIENL SLDGALIIDA VDDAEVNVSG SVQNNGWILE
TVDYKDTTEP EVLRIRGFKF NKTEQLETKY SEPGKFHLKA *