GBrowse Details

Vigan.02G142300.01

Basic Information:
Name: Vigan.02G142300.01
Multiple alignment
Variant Information
Position: Chr02:12928946..12931938 (- strand)
Length: 2993
Functional Information:
Description: Similar to Uncharacterized protein. [I1JZ08, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: BTB/POZ-like (IPR000210)
BTB/POZ fold (IPR011333)
BTB/POZ (IPR013069)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:69.85,52.18,4.03,8.87,11.09,10.73,10.42,5.41
Arabidopsis thaliana homolog: AT4G08455.1
Automatic updates:
Name: NM_001372110 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max BTB/POZ domain-containing protein (LOC100794443), mRNA.
PubMed ID: 30113770 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:12928946..12929459 (- strand)
Length: 514
Type: three_prime_UTR
Position: Chr02:12929460..12929909 (- strand)
Length: 450
Type: CDS
Position: Chr02:12931484..12931801 (- strand)
Length: 318
Type: CDS
Position: Chr02:12931802..12931938 (- strand)
Length: 137
Type: five_prime_UTR


>Vigan.02G142300.01
ATGGAACAGA AAACGCAGGG CAATGACGGT TCACAAAAGG AGGTTTCTCT CGAGTAGCAT TGGCTATATT GACTGTGTAT
ATCGGCGAGG GTAGTTTGTC GTTAGGAGCG TGATTCAGCA CACCATATCA GCGAAGAATG CTTCCGCGGC GGTGCACGGC
GTCAGCGGCG GCGGGGCAGA CGGGGAACAG CGACAGCGAC TTGGATGAGT TTATTATGCG GTGCCTCTCC TGCGAGGAGC
AATACGACAT GATGGACTCC GGAACCTGCA GGGAGTGCTA CCAAGAGGCC AACGAGGCCG AGGAGGAGCT CCGCCTCGAG
ATCGATGACC TCAAGTCCAA GGTCTCCTTC CTCACACTCT CCTCTCCCAC TCTCAATCCT TCTACCGCTG ATATCGTCCT
CGTTCCCGTC GACGACTCCG ACGCCACTCC CATTCCCGCT CACAAGCATG TTCTGGTTAG TCGCTCTCCT GTTTTCAATG
CAATGCTTGA GAATGATATG GAGGAAAGGC GGAGTGGCAC CATCAAGATT TCTGACGTAT CACATGATAC CCTCCGCGCT
TTTGTTAACT ACTTATACAC TGCCGAAGCG GCCCTTGATA ACCAAATGGC CTGTAACCTG TTGGTTTTGG GAGAAAAGTA
TCAAGTGAAG CATCTGAAGA CATATTGTGA GAAGTATTTG ATCGCCAAAA TGAATTGGAA TAGGGCTATT GCAAACTATG
CCTTTGCATA TCAATACAAT TGCAAACAAT TACGAAGTGC GTCCTTGGCA GTGATCTTGG ACAAAATGGA TTTGCTCACT
CAAAACGAAT ATTATGCGGA GCTCGTGGAC ACCAATCCTC GTCTTGTTGT GGAAATATAT GAAACATATA TTGGCAAGCA
GTTAAACACC GCAGGCACCT TTTAGGTTAT AGGAACAAAG CTAAGGAAGT TAGTGAAATC AGCTTTAAGC TGGGGTGGCA
CTTCTGTTGG GATTAGATTC TTGATTGGCA ATTAGTCTGT GGTAGTATAT AAATTGTACA TTTTCATACA CTGCTACAGT
TAAACATGCA ATAGTACTGT TCTTTCTAGA TAACCTTTCG GTTCTTCATG GACTGGATAA TAGATAATTT GTATCAATGC
CGTGAGTAGT GATGGGGCTT CCCCATGGTT TCTTCTAAAT GTTTCTACTG TTGAAATACC ATATTTCTTC CGTTTGTGCT
GTTGTTGCTG ACTGACTTCT TTGGGAGGAA TAAGAAATAT AAAAGATATA GGTGGAGATA TTTATGGCAG GCTCCAAGTC
AGGGAAGTGT GGCGTTGGAG GTGTGATAAG TGATAGTGAT GATGTTTTTC TTTGTGGGCT TTGGAATAAG CTTCGTGCTG
GTTCTGACTC AAAAATTGCA GTGAGTCTCC TAACAATTTT GTTGCATTTT GTATCCCTG

>Vigan.02G142300.01
ATGCTTCCGC GGCGGTGCAC GGCGTCAGCG GCGGCGGGGC AGACGGGGAA CAGCGACAGC GACTTGGATG AGTTTATTAT
GCGGTGCCTC TCCTGCGAGG AGCAATACGA CATGATGGAC TCCGGAACCT GCAGGGAGTG CTACCAAGAG GCCAACGAGG
CCGAGGAGGA GCTCCGCCTC GAGATCGATG ACCTCAAGTC CAAGGTCTCC TTCCTCACAC TCTCCTCTCC CACTCTCAAT
CCTTCTACCG CTGATATCGT CCTCGTTCCC GTCGACGACT CCGACGCCAC TCCCATTCCC GCTCACAAGC ATGTTCTGGT
TAGTCGCTCT CCTGTTTTCA ATGCAATGCT TGAGAATGAT ATGGAGGAAA GGCGGAGTGG CACCATCAAG ATTTCTGACG
TATCACATGA TACCCTCCGC GCTTTTGTTA ACTACTTATA CACTGCCGAA GCGGCCCTTG ATAACCAAAT GGCCTGTAAC
CTGTTGGTTT TGGGAGAAAA GTATCAAGTG AAGCATCTGA AGACATATTG TGAGAAGTAT TTGATCGCCA AAATGAATTG
GAATAGGGCT ATTGCAAACT ATGCCTTTGC ATATCAATAC AATTGCAAAC AATTACGAAG TGCGTCCTTG GCAGTGATCT
TGGACAAAAT GGATTTGCTC ACTCAAAACG AATATTATGC GGAGCTCGTG GACACCAATC CTCGTCTTGT TGTGGAAATA
TATGAAACAT ATATTGGCAA GCAGTTAAAC ACCGCAGGCA CCTTTTAG

>Vigan.02G142300.01
MLPRRCTASA AAGQTGNSDS DLDEFIMRCL SCEEQYDMMD SGTCRECYQE ANEAEEELRL EIDDLKSKVS FLTLSSPTLN
PSTADIVLVP VDDSDATPIP AHKHVLVSRS PVFNAMLEND MEERRSGTIK ISDVSHDTLR AFVNYLYTAE AALDNQMACN
LLVLGEKYQV KHLKTYCEKY LIAKMNWNRA IANYAFAYQY NCKQLRSASL AVILDKMDLL TQNEYYAELV DTNPRLVVEI
YETYIGKQLN TAGTF*