GBrowse Details

Vigan.02G148500.01

Basic Information:
Name: Vigan.02G148500.01
Multiple alignment
Variant Information
Position: Chr02:13703960..13707034 (+ strand)
Length: 3075
Functional Information:
Description: Similar to Alcohol dehydrogenase-1F. [Q43016, Phaseolus acutifolius]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:131.63,46.68,50.60,6.92,758.25,155.91,395.14,60.09
Arabidopsis thaliana homolog: AT1G77120.1
Automatic updates:
Name: NM_001353241 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alcohol dehydrogenase family protein (ADH2), mRNA.
PubMed ID: 21811849 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:13703960..13704219 (+ strand)
Length: 260
Type: five_prime_UTR
Position: Chr02:13704220..13704256 (+ strand)
Length: 37
Type: CDS
Position: Chr02:13704709..13704845 (+ strand)
Length: 137
Type: CDS
Position: Chr02:13705013..13705059 (+ strand)
Length: 47
Type: CDS
Position: Chr02:13705246..13705571 (+ strand)
Length: 326
Type: CDS
Position: Chr02:13705657..13705739 (+ strand)
Length: 83
Type: CDS
Position: Chr02:13705849..13705924 (+ strand)
Length: 76
Type: CDS
Position: Chr02:13706030..13706091 (+ strand)
Length: 62
Type: CDS
Position: Chr02:13706205..13706300 (+ strand)
Length: 96
Type: CDS
Position: Chr02:13706387..13706548 (+ strand)
Length: 162
Type: CDS
Position: Chr02:13706646..13706762 (+ strand)
Length: 117
Type: CDS
Position: Chr02:13706763..13707034 (+ strand)
Length: 272
Type: three_prime_UTR


>Vigan.02G148500.01
ATTAAAACTA AAACCAGGAG CTGTTTTGTT GTGTGGTAAT TGATACGTGG TACTGTGTCC GAATAATAAT CTAAGGCGCC
GCTTGGATAC TAAACAACAG CATAACCAGA GTGGTATTGT CCATTTATCA ACCTTCAATA TCACTCTCTC AGACTATATA
AATATATTCT GTACTCTCTT CTTCAAGGTC ACAGTCAATA CAAATTCATC AATTCTGCTT TCGTTCTTTC ATCTTTTCTT
CTCACCAACT ATCATTAGCC ATGCCGAGCA CAGCTGGTCA GGTCATCAAA TGCAAAGCCG CGGTAGCATG GGAGGCAGGG
AAGCCACTGG TGATTGAGGA AGTAGAGGTG GCACCACCAG AGGCTGGTGA AGTGCGTTTG AAGATCCTCT ACACCTCTCT
TTGCCACACT GATGTTTACT TCTGGGAAGC CAAGGGCCAG ACTCCATTGT TTCCTCGCAT ATTTGGTCAT GAGGCTGGAG
GGATTGTGGA GAGCGTAGGT GAGGGTGTGA CTCATCTGAA ACCAGGGGAC CATGCTCTTC CTGTGTTTAC AGGGGAGTGT
GGGGAATGTG CGCATTGTAA GTCAGAGGAG AGCAACATGT GTGATCTGCT GAGGATCAAC ACTGATCGTG GTGTCATGAT
CCATGATAGT CAAACAAGAT TTTCTATAAA GGGACAACCT ATTTACCATT TTGTCGGTAC TTCTACATTC AGTGAATACA
CTGTGGTTCA TGCTGGATGT GTTGCCAAAG TCAACCCTGC TGCCCCACTT GACAAAATTT GTGTTCTCAG TTGTGGAATA
TGCACAGGTC TTGGGGCTAC TGTCAATGTT GCAAAACCAA AACCTGGTTC TTCTGTTGCC ATTTTTGGAC TTGGAGCTGT
TGGCCTTGCC GCTGCTGAAG GGGCAAGGAT TTCCGGTGCA TCAAGAATCA TTGGGGTTGA TTTAGTTTCA AGCCGATTTG
AAGAAGCTAA GAAGTTTGGG GTCAATGAAT TTGTGAACCC AAAAGACCAT GACAAACCCG TACAACAGGT AATTGCTGAA
ATGACAAATG GGGGAGTGGA TCGTGCTGTT GAATGTACTG GCAGCATCCA GGCCATGGTG TCAGCATTCG AATGTGTTCA
CGATGGTTGG GGTGTTGCTG TACTTGTTGG AGTGCCAAAC AAAGATGATG CATTCAAAAC TCATCCAGTG AATTTTTTGA
ACGAGAGGAC TCTTAAGGGT ACCTTTTATG GTAACTACAA ACCTCGCACT GATCTTCCTT CAGTTGTGGA GAAGTACATG
AATGGGGAAT TGGAACTGGA GAAATTCATC ACTCACACCG TTCCATTCTC AGAAATTAAC AAAGCTTTTG ATTACATGCT
GAAAGGGGAG TCCATCAGAT GCATTATCCG TATGGGAGAG TAGAACTGTA AAATAAAGGA TGACATAGTT CCTGTGGAGG
GACTTTGTTC TCTTTCTGGT TATCAAAAGA AGAAAATAAA GATTATGTAT AATTAATCCC TTTTTGGATT ATTGAATCTG
TGAGAATTTG TCTATGTTTG ATTGTAAAGA ACGATAGGAG GCTTTGATGC TGTTATTGTC TATTTCATGA TAAATAAAAT
GCCGTTTTGT GGATGAGTTG TTCTTAGAAA TAACTTTCAA CTATGATATA TTTCAAAAAT AAATTACTTC GAGCT

>Vigan.02G148500.01
ATGCCGAGCA CAGCTGGTCA GGTCATCAAA TGCAAAGCCG CGGTAGCATG GGAGGCAGGG AAGCCACTGG TGATTGAGGA
AGTAGAGGTG GCACCACCAG AGGCTGGTGA AGTGCGTTTG AAGATCCTCT ACACCTCTCT TTGCCACACT GATGTTTACT
TCTGGGAAGC CAAGGGCCAG ACTCCATTGT TTCCTCGCAT ATTTGGTCAT GAGGCTGGAG GGATTGTGGA GAGCGTAGGT
GAGGGTGTGA CTCATCTGAA ACCAGGGGAC CATGCTCTTC CTGTGTTTAC AGGGGAGTGT GGGGAATGTG CGCATTGTAA
GTCAGAGGAG AGCAACATGT GTGATCTGCT GAGGATCAAC ACTGATCGTG GTGTCATGAT CCATGATAGT CAAACAAGAT
TTTCTATAAA GGGACAACCT ATTTACCATT TTGTCGGTAC TTCTACATTC AGTGAATACA CTGTGGTTCA TGCTGGATGT
GTTGCCAAAG TCAACCCTGC TGCCCCACTT GACAAAATTT GTGTTCTCAG TTGTGGAATA TGCACAGGTC TTGGGGCTAC
TGTCAATGTT GCAAAACCAA AACCTGGTTC TTCTGTTGCC ATTTTTGGAC TTGGAGCTGT TGGCCTTGCC GCTGCTGAAG
GGGCAAGGAT TTCCGGTGCA TCAAGAATCA TTGGGGTTGA TTTAGTTTCA AGCCGATTTG AAGAAGCTAA GAAGTTTGGG
GTCAATGAAT TTGTGAACCC AAAAGACCAT GACAAACCCG TACAACAGGT AATTGCTGAA ATGACAAATG GGGGAGTGGA
TCGTGCTGTT GAATGTACTG GCAGCATCCA GGCCATGGTG TCAGCATTCG AATGTGTTCA CGATGGTTGG GGTGTTGCTG
TACTTGTTGG AGTGCCAAAC AAAGATGATG CATTCAAAAC TCATCCAGTG AATTTTTTGA ACGAGAGGAC TCTTAAGGGT
ACCTTTTATG GTAACTACAA ACCTCGCACT GATCTTCCTT CAGTTGTGGA GAAGTACATG AATGGGGAAT TGGAACTGGA
GAAATTCATC ACTCACACCG TTCCATTCTC AGAAATTAAC AAAGCTTTTG ATTACATGCT GAAAGGGGAG TCCATCAGAT
GCATTATCCG TATGGGAGAG TAG

>Vigan.02G148500.01
MPSTAGQVIK CKAAVAWEAG KPLVIEEVEV APPEAGEVRL KILYTSLCHT DVYFWEAKGQ TPLFPRIFGH EAGGIVESVG
EGVTHLKPGD HALPVFTGEC GECAHCKSEE SNMCDLLRIN TDRGVMIHDS QTRFSIKGQP IYHFVGTSTF SEYTVVHAGC
VAKVNPAAPL DKICVLSCGI CTGLGATVNV AKPKPGSSVA IFGLGAVGLA AAEGARISGA SRIIGVDLVS SRFEEAKKFG
VNEFVNPKDH DKPVQQVIAE MTNGGVDRAV ECTGSIQAMV SAFECVHDGW GVAVLVGVPN KDDAFKTHPV NFLNERTLKG
TFYGNYKPRT DLPSVVEKYM NGELELEKFI THTVPFSEIN KAFDYMLKGE SIRCIIRMGE *