GBrowse Details

Vigan.02G149700.01

Basic Information:
Name: Vigan.02G149700.01
Multiple alignment
Variant Information
Position: Chr02:13846711..13848006 (+ strand)
Length: 1296
Functional Information:
Description: Similar to Uncharacterized protein. [I1KAK6, Glycine max]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:330.94,11.86,28.96,273.47,21.89,22.00,10.57,64.41
Automatic updates:
Name: KM506762 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Suinong 10 pathogenesis-related protein mRNA, complete cds.
PubMed ID: 26114301 NCBI(pubmed)
Status: Known Variant
Name: NM_001254702 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pathogen-related protein-like (LOC100805630), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:13846711..13846795 (+ strand)
Length: 85
Type: five_prime_UTR
Position: Chr02:13846796..13846930 (+ strand)
Length: 135
Type: CDS
Position: Chr02:13847020..13847152 (+ strand)
Length: 133
Type: CDS
Position: Chr02:13847222..13847523 (+ strand)
Length: 302
Type: CDS
Position: Chr02:13847633..13847776 (+ strand)
Length: 144
Type: CDS
Position: Chr02:13847777..13848006 (+ strand)
Length: 230
Type: three_prime_UTR


>Vigan.02G149700.01
TCTTTTCCAA AGAGAGTTTT GGATGTACAT GACTTAGTAT CCATAAAAGA AAGTGTGATG AGAAAAACAC TGCAGTGGTC
CAAAGATGAC AGCGTCAAGT GTTGCGGAGG ACAAGTACCG CCCCTTACTG CGCCAAGATA TCGAGGAGAA CACCAAATGG
AGATACGGTC CTCCAAGTTA TGAAGTTGTG AACAAACTAT TTGAAGAAGG CCGAACAAAG GTATGGGCTC CAGGCTCACT
GGAAGAGAAG GTGCAGACTA TAGTGAAGCA GTGGGAGATG GAAATGTTCC ACAAGCTTGA TTTCCAGGAG AACCGATCGG
TGGATCCAGA GAAATACATC TTCAGCCTAA ACGGAAGAAA GGGCATAAGT TTGGAAGAGA AAAGGAAGCT TGGTGGAGGG
TATATCCCTC TTCTGCAAAC CTCTCTGCCA GAGAAACTAA GGCCCTACAA TCCGTATGCA GAAACAGCAG ATTCATCCCA
CAAGGCCTTT ACCACTGCAT TTCCACGCGG TTTTGCTCTC GAGATTCTGC ACGTTTATTC AGGACCACCA GAGATAGTGT
ACAAGTTCAG GCACTGGGGT TACATGGAGG GTCCCTTCAA TGGCCATGCT CCCACTGGCG ACAAAATTGA ACTCTATGGA
ATGGCTATTT TCACGTTGGA TGAGAATTCG AAAATAGTGA AGGTGGAATT TTTTTATGAT CCTGCGGAAC TGCTGGGAGG
TCTCTTGAAG GGTGCTGAGT TTGAGAACAG TGCTGAAGAT GCTGTTGCGA GCTGTCCTGT CCTCAGGAGC ACTGGCTAGA
GAAGAACATG TTCAAAAACT TTAAGCTTCA ATAAAATTAT GGTGCAAAAA TCCTATCTGT TGCTTCTTTA ATTCTAGTTT
TTCATCCCTA ATTCGAGCAT TAAGGTTGTA ATTTATTAGT TCAAATCCCT TCCTAAATCA TCTTCAATGT CTAATATATA
TTTAAAGCCG TATGTTAGCA TTAAGAAGTT GTGATTAGTT AAACGATTAT TAATAAAACT CAATAATTC

>Vigan.02G149700.01
ATGACAGCGT CAAGTGTTGC GGAGGACAAG TACCGCCCCT TACTGCGCCA AGATATCGAG GAGAACACCA AATGGAGATA
CGGTCCTCCA AGTTATGAAG TTGTGAACAA ACTATTTGAA GAAGGCCGAA CAAAGGTATG GGCTCCAGGC TCACTGGAAG
AGAAGGTGCA GACTATAGTG AAGCAGTGGG AGATGGAAAT GTTCCACAAG CTTGATTTCC AGGAGAACCG ATCGGTGGAT
CCAGAGAAAT ACATCTTCAG CCTAAACGGA AGAAAGGGCA TAAGTTTGGA AGAGAAAAGG AAGCTTGGTG GAGGGTATAT
CCCTCTTCTG CAAACCTCTC TGCCAGAGAA ACTAAGGCCC TACAATCCGT ATGCAGAAAC AGCAGATTCA TCCCACAAGG
CCTTTACCAC TGCATTTCCA CGCGGTTTTG CTCTCGAGAT TCTGCACGTT TATTCAGGAC CACCAGAGAT AGTGTACAAG
TTCAGGCACT GGGGTTACAT GGAGGGTCCC TTCAATGGCC ATGCTCCCAC TGGCGACAAA ATTGAACTCT ATGGAATGGC
TATTTTCACG TTGGATGAGA ATTCGAAAAT AGTGAAGGTG GAATTTTTTT ATGATCCTGC GGAACTGCTG GGAGGTCTCT
TGAAGGGTGC TGAGTTTGAG AACAGTGCTG AAGATGCTGT TGCGAGCTGT CCTGTCCTCA GGAGCACTGG CTAG

>Vigan.02G149700.01
MTASSVAEDK YRPLLRQDIE ENTKWRYGPP SYEVVNKLFE EGRTKVWAPG SLEEKVQTIV KQWEMEMFHK LDFQENRSVD
PEKYIFSLNG RKGISLEEKR KLGGGYIPLL QTSLPEKLRP YNPYAETADS SHKAFTTAFP RGFALEILHV YSGPPEIVYK
FRHWGYMEGP FNGHAPTGDK IELYGMAIFT LDENSKIVKV EFFYDPAELL GGLLKGAEFE NSAEDAVASC PVLRSTG*