GBrowse Details

Vigan.02G149900.01

Basic Information:
Name: Vigan.02G149900.01
Multiple alignment
Variant Information
Position: Chr02:13855020..13857075 (- strand)
Length: 2056
Functional Information:
Description: Similar to Uncharacterized protein. [I1KAL1, Glycine max]
GO: Biological Process: glycolipid transport (GO:0046836)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: glycolipid transporter activity (GO:0017089)
Molecular Function: glycolipid binding (GO:0051861)
InterPro: Glycolipid transfer protein domain (IPR014830)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,0.00,2.69,9.00,0.99,2.21,67.41,1.30
Automatic updates:
Name: NM_001250802 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527808 (LOC100527808), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:13855020..13855295 (- strand)
Length: 276
Type: three_prime_UTR
Position: Chr02:13855296..13855331 (- strand)
Length: 36
Type: CDS
Position: Chr02:13855422..13855565 (- strand)
Length: 144
Type: CDS
Position: Chr02:13855783..13855918 (- strand)
Length: 136
Type: CDS
Position: Chr02:13856151..13856281 (- strand)
Length: 131
Type: CDS
Position: Chr02:13856466..13856521 (- strand)
Length: 56
Type: CDS
Position: Chr02:13856612..13856771 (- strand)
Length: 160
Type: CDS
Position: Chr02:13856772..13857075 (- strand)
Length: 304
Type: five_prime_UTR


>Vigan.02G149900.01
AGCTGTTTTA CTAGATGTGA AGAACAATTA AATAATTGGC AAGGTGGGCA AAGCAAGATT CACTCCTTGG TTCAACCACT
TGGATCAAAA TTTTGAAATT TCTTTTACTC TCTCTCTATC TGGGAGCAAG TATAATATAA ATTTTTGAAC CAATTAACTA
CGGTTGGAAG TTCAAGGCTT CAAGCTAGCT AGCTAGAGGT ATTAATAGAG AAGCCTAGTT GGGTATTGGA AGCTGCATAC
ATAATATACA TGTTTGTGTA TCCGAGAAGT GGAAGAGGGA GAGGGAGGGA AGATAATAAG GAGAATGAAG AGGAGCAGAG
ATATGGAGAA GAGATCAGAG ATAAACTCTG CCATTGAAGA GTTGTCTTTG CTGGCTATAG TCAAACCAGG TGGTAATCAT
GAGACTGCGA ACATCCCCAC CAAACCCTTC CTATCTCTAT GCTACATGGT TCTACAAGTT CTTGATAAGA TAGGCCCAAC
GATGGCTGTT TTGAGACAAG ACGTTCACCA GAATATTAAG AGATTGGAAA TGATGCATGA ATTGAACCCC TCAATGAATT
CGAATTTGGT TGAAATACTG AAATCAGAAG CTAGCAAAGG CAACGCAAGA AAGAGGTTTA GTTGCAGTAA AGCCTTTCTT
TGGCTCACCA GATCCCTGGA TTTCTCTTCA GCATTGTTAC GAGCATTAGA AATCGATCCT AAAAAGAATA TGGAGCAAAT
AGTTCAAGAG ACTTATGATG CAACCCTGTC ACCATGGCAT GGATGGATTT CATCAGCTGC TTTCAGAGTA GCTATAAAAC
TAGTGCCAGA TACTCAAACT TTCATGGATC TCCTCAAGGA AAGAGATGAA AGCTGTGACA CCCTAAAGGA CCAAATGCAG
ATCTTGGTTT CTTTGCTTGT GCCTTTTCTT GAGGATGTTC ATTGTATTCT TAAAGTGTAT AACTTGGACA GGATTAAGTC
AACTTGAAGA TAGAAGAATA TGTACAGCTC TGTGTAGTGT ATATTTTGGT TTCATTCTTC TCTGTTTTCG TGTAAATGGC
TTGTATAGTA AAATTTTCGT CAACACTGAT ATGTAGTTAT AAATTTGCTT TCGGCTACTC AATATATAAT ATTATTATAC
ATTAAAATTG TACAAGTTGA ATTCAAAGTT TTATTTTGTC TAGATGGAGG ATCTAATTTA GAGCCTTGTT ACATCCAAAA
CGTGCTAAGT TAATTAAAGT TGAAGGAGGA ATCCACCACT CAA

>Vigan.02G149900.01
ATGAAGAGGA GCAGAGATAT GGAGAAGAGA TCAGAGATAA ACTCTGCCAT TGAAGAGTTG TCTTTGCTGG CTATAGTCAA
ACCAGGTGGT AATCATGAGA CTGCGAACAT CCCCACCAAA CCCTTCCTAT CTCTATGCTA CATGGTTCTA CAAGTTCTTG
ATAAGATAGG CCCAACGATG GCTGTTTTGA GACAAGACGT TCACCAGAAT ATTAAGAGAT TGGAAATGAT GCATGAATTG
AACCCCTCAA TGAATTCGAA TTTGGTTGAA ATACTGAAAT CAGAAGCTAG CAAAGGCAAC GCAAGAAAGA GGTTTAGTTG
CAGTAAAGCC TTTCTTTGGC TCACCAGATC CCTGGATTTC TCTTCAGCAT TGTTACGAGC ATTAGAAATC GATCCTAAAA
AGAATATGGA GCAAATAGTT CAAGAGACTT ATGATGCAAC CCTGTCACCA TGGCATGGAT GGATTTCATC AGCTGCTTTC
AGAGTAGCTA TAAAACTAGT GCCAGATACT CAAACTTTCA TGGATCTCCT CAAGGAAAGA GATGAAAGCT GTGACACCCT
AAAGGACCAA ATGCAGATCT TGGTTTCTTT GCTTGTGCCT TTTCTTGAGG ATGTTCATTG TATTCTTAAA GTGTATAACT
TGGACAGGAT TAAGTCAACT TGA

>Vigan.02G149900.01
MKRSRDMEKR SEINSAIEEL SLLAIVKPGG NHETANIPTK PFLSLCYMVL QVLDKIGPTM AVLRQDVHQN IKRLEMMHEL
NPSMNSNLVE ILKSEASKGN ARKRFSCSKA FLWLTRSLDF SSALLRALEI DPKKNMEQIV QETYDATLSP WHGWISSAAF
RVAIKLVPDT QTFMDLLKER DESCDTLKDQ MQILVSLLVP FLEDVHCILK VYNLDRIKST *