GBrowse Details

Vigan.02G150600.01

Basic Information:
Name: Vigan.02G150600.01
Multiple alignment
Variant Information
Position: Chr02:13964789..13970535 (- strand)
Length: 5747
Functional Information:
Description: Similar to Ubiquitin-associated/translation elongation factor EF1B protein. [Q8LG11, Arabidopsis thaliana]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: UBA-like (IPR009060)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.77,5.38,2.17,2.20,2.68,2.00,4.03,1.52
Arabidopsis thaliana homolog: AT5G53330.1
Automatic updates:
Name: NM_001253218 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100808287 (LOC100808287), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:13964789..13967646 (- strand)
Length: 2858
Type: three_prime_UTR
Position: Chr02:13967647..13967781 (- strand)
Length: 135
Type: CDS
Position: Chr02:13969209..13969310 (- strand)
Length: 102
Type: CDS
Position: Chr02:13969520..13969684 (- strand)
Length: 165
Type: CDS
Position: Chr02:13969957..13970015 (- strand)
Length: 59
Type: CDS
Position: Chr02:13970165..13970279 (- strand)
Length: 115
Type: CDS
Position: Chr02:13970280..13970535 (- strand)
Length: 256
Type: five_prime_UTR


>Vigan.02G150600.01
AAATCCTTGG ACTTTATCCC GGTGTTAGCG TGCATGGACA TGTATTATCT AATGACTAAC TGAACAAATT TAGCTATCAA
CAATTTTCCA TTTTAGAACT CAATTCAGCT TTGATTAGTC AATTTCTTTT GCTGATAAAT AGTCAAATTT TCAAATAATT
ATTGAGTAAA CATTTTGTTT GATCAGTCAA AGAAAACAAA ACTTACAAGG TGAAGTTAGA ATCCGGTTCC GAAGTGGGAC
GGCACACGTT TGTTCGATGG ACTACGATTT CAGAAGCAGG TCGGGCCTAC AAGCTCCGAT GTACCGTCCG CAGCCGCCAC
CGCCACCGAT GTACCGTCCG ACACCGTATG AGCAGAATCC CACACCTTCA TCAGGATTAG GATTTGGCGT TAGGGTTGCT
ATAAGGCCAG AATATAGGAT CACACCGCCG CCTCATTTAT CGCCTCATGC GGGAGATAAT CCAAGGAGCA ACTTCCAATT
TGAATTTGAA TTAGAGAGAA AAATTTTAGC TGAAGCGGAT AAGGATAACC CAAATTGGAG CAAATTTGGA TCAGAAAATA
TCCCGACCAA AGTTTCTGAT TCTTCAACAG CAAAGGTTCC TGCTGTGGAT TCCATTATGA GCAAATTTAT AGCTATGGGG
CTCAGCCAAG AAGCTGTTCC AATTGCTGTT GAAAACTATG GTGATGATCC AACCAAAGTT CAAGAATTTG TGAAAGGCTA
CACACTTCTA CGTGAAATGG GATTTTCATC AAATAGTGTT GCGGAAGCTC TGGTTATGAA TGACAACCGT ACCGACAGGG
CACTAGCGCA TTTCCTTAAC GGTTCATCGT AGAGACTATT AATGACTGAG GAATATGTTA GTTTCTTTGG ACGATGATAA
ATAATGGTCA GATATAGGTT GAAACATGGG CCATCTGTTG GTGTCCTTAG TTTTATATAC ACATATGTTG GTGATTTGTG
GAATTGGTTT TGGTTTGAAA GGATTGGTAA TTCTTAGAGA TAACAAATAG ATCTAATTTC CTCCCCGTAT TATGTCTTGC
TTTGTTTGGA TGTCAAACGA TTAATTACGT TATTCTATTG CGAATCTTCA GATTCTAATG ATAAATAGTT AACTTATATG
AAAAAACCAT AATCATGAAT CAAAATTCAC TGTCCTATCT CATGTACAAA GTTCCCTTAA CTGCGAATGA GATTATGAGC
CACCATGTCA TTCCTATAAA TTCTTTCATC AAGTACATTT TTGGAAGTTC TTTAACTAAT AGGACCCTCT TTCCAATGCC
TACGAAAAGA AGGAACCCAA TAATGATAGA AATCAATTTA TAGGCAGCAA GCTCTTGTAG AAAAAAAAAA AAAACAAGGC
GGGAAGCTGA AGTTTTATTT GCTGTAGATG TTGCATGCCT CAGTTATAAC TGCAAGTAAA CCTTCAACCA CTCAACTTGC
CAACTGTGCT CATAAGATGA AACTGTTTCT CGATGGACAT CAAACAACTT TTCCAAAGAC ATCTCTACGA ATAACTCCTC
TTCCAATAGA AATTAAAAAA AAAAATCTTA GGAAGCAAAC CTTGTAACAT GACTCCCATG TATTAACGTT TGTGGTCTTC
TCACAAGAAT GAACTGGAAT GAATTCAAAC ACCAGCACAG ATTGCTCCTG AAAAACATAA TCATGTATAC TTCAAAATTT
GACGACGTCA ACCATTATTA TGGTAAGTAG ATTTTCTATA TAAATTTCTT GTATACTTTA AACTAGAACA TGAAATTTTA
AACTAGCACA CATGCACATG TAATACATGG ATAGAGAGGG AGACCTGTCG ACCAAGATGA ACAACAAAAC TTTGCCTCAT
CAACATGCTT CACGTCAAGT CCAATAAACC AGGATCCAGC GCTCACATCA TCGTGGGCAT ATGTACGAAG AATAGATCTG
TCAAGTCAAT AGATTCAAGA TTAATGCATA AATGGCAACT AACAGCATAT GTGCAGATAG GAGTATATCT GACCTGTTTA
TTGATATAAA TTTGGCCAAA GCTCGTGATA TAACATACAT CTCTCCTGAT GCATGGCGAA AGTATCTGTT GAGATATTTG
ATCATTATTT CAAGAGGAGA TAGATGACAC GAAGAAAAAT ATTTATGATG GTTAGTGCAC CTCAAGGCAT TCGGTGTTTT
GCACCATAAC ACTAAATAAA TACATGAAAT ATTCAAATCA CATGATAGGG ATACAGAAAT TTTACATTGA CTTGACATTT
TGGCATTTAA TAATGTATAA TCATGTCTGT AGAGTATTTT TTTTATTAGG AATTGTATGT GCAGAAAACA TAATTTTATT
CATATAAAAG TCAACATATT TATAGAACAT GAGTAAAACA GAAAAACTAT CAACTAATAA ACTGCCTAAA AAATATTGTC
CAGAAAAAAG ATAACAAATG TATCCTAACA GTCAATATGG CTTTTAAAAT AAATCATAAA AATCTAAAAT ACTGTGTTGC
TAATTAGTTC CAACAGTTAC ATATTCAACA ACATCGCATA CTGGACTTCT CCCAAAACTA TTGTTCTGAA AAAATGTATT
GCAGTTTTAC ATACTGGATC AACAAACTCA GTTGCAGAAT ATCGTGAAAA AAAAAATGTT TCACCAAAGA TACACTTTCA
GCTATGAAAA ACTGGTAAAT ACTGCATAAT TCATGACTAA TTTATACAAG TTTGACAAGC AGTAAAATTA ATACAGTTGT
TCAGTCATAT GAAATAACAG GTTGCTTGGC TTACGATTTT TTGTCACCAA ATTTCCACCA TTCTGGTTCA TACCATTTAT
GGTTCCTGTC ATATTACAAG ATACCAGCAT GAGAATCATA ACATATATTC TCTCTAGAGC ACATAAAATA AAACATTTTA
AGCAACTTAA GGGGCTCACA GCTCAGAGAA AACTTCGCCT GATTTCATGC ATCCCAAGTA AACACGTGGT TTGTCCAAGT
GAGCAGCCAG TGTAGCTCCC AAGGCATCTG TGCAAGGAAA AATAAAGTGG TAAGACACAT GTACATATAA AAATGGGTAA
CAAGTTCTCT GGAATTTCAT TAAATAGGGT GGAGGGACGA GCACACAATA AAATGTTAGC ATACAATCAT CAAAGGAACA
ATTAAATTTT TTTCTTCTTT GTTTTCTTTA ACATATTTCC TCTATTCTTG CTGGTGCTTG AAATTGGTAA TGGGTTGTAG
CCTAATAATA CAATCTTGGA TAATAGATGT CTAATAAGAT GAAACTTGAA GATTACTCCA CAAGAACCTC AGTTGCTATC
AAGAGAAATG CTTTATTCTT CCTATATTTC TCTAATAGGT TGAAGTTTCC ATCGGAAGCA TGCAACCATT TACGACGAGA
ATGTTTGAAT TAGCTATTAT ATATTATTTA ACATGAACTT TTAATATTTT AAAATTCATC AAGTACGAAG TTCTTGGTAT
CACAAGGCCT GAAATTCTTG ACATATATAA AAGGAATATA CATTTGTATT TGCAGGTTAA GAAAAATAGA AAGGATAGAT
CACTGTTACA CTGGACAAGC AATAACCTTC TGCCGAAAGA TTGATAATTT TTCGAAAACA GTTTTAAGAT GAACGTATAA
AGATGACAGA AAAGTACACT ATAGTCTAAT AGCCGTAGCT ATCATATGAT ATAGCCATCA TATCAAATTT TCTGAACATC
CAGCTGCAAG 

>Vigan.02G150600.01
ATGGACTACG ATTTCAGAAG CAGGTCGGGC CTACAAGCTC CGATGTACCG TCCGCAGCCG CCACCGCCAC CGATGTACCG
TCCGACACCG TATGAGCAGA ATCCCACACC TTCATCAGGA TTAGGATTTG GCGTTAGGGT TGCTATAAGG CCAGAATATA
GGATCACACC GCCGCCTCAT TTATCGCCTC ATGCGGGAGA TAATCCAAGG AGCAACTTCC AATTTGAATT TGAATTAGAG
AGAAAAATTT TAGCTGAAGC GGATAAGGAT AACCCAAATT GGAGCAAATT TGGATCAGAA AATATCCCGA CCAAAGTTTC
TGATTCTTCA ACAGCAAAGG TTCCTGCTGT GGATTCCATT ATGAGCAAAT TTATAGCTAT GGGGCTCAGC CAAGAAGCTG
TTCCAATTGC TGTTGAAAAC TATGGTGATG ATCCAACCAA AGTTCAAGAA TTTGTGAAAG GCTACACACT TCTACGTGAA
ATGGGATTTT CATCAAATAG TGTTGCGGAA GCTCTGGTTA TGAATGACAA CCGTACCGAC AGGGCACTAG CGCATTTCCT
TAACGGTTCA TCGTAG

>Vigan.02G150600.01
MDYDFRSRSG LQAPMYRPQP PPPPMYRPTP YEQNPTPSSG LGFGVRVAIR PEYRITPPPH LSPHAGDNPR SNFQFEFELE
RKILAEADKD NPNWSKFGSE NIPTKVSDSS TAKVPAVDSI MSKFIAMGLS QEAVPIAVEN YGDDPTKVQE FVKGYTLLRE
MGFSSNSVAE ALVMNDNRTD RALAHFLNGS S*