GBrowse Details

Vigan.02G154200.01

Basic Information:
Name: Vigan.02G154200.01
Multiple alignment
Variant Information
Position: Chr02:14479379..14487370 (+ strand)
Length: 7992
Functional Information:
Description: Similar to Uncharacterized protein. [I1JYT7, Glycine max]
InterPro: mRNA (guanine-N(7))-methyltransferase domain (IPR004971)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.33,7.96,4.91,7.28,6.24,2.23,5.69,5.56
Arabidopsis thaliana homolog: AT3G52210.3
Automatic updates:
Name: NM_001360138 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100817375), mRNA.
PubMed ID: 28294342 NCBI(pubmed)
25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:14479379..14479486 (+ strand)
Length: 108
Type: five_prime_UTR
Position: Chr02:14479487..14479567 (+ strand)
Length: 81
Type: CDS
Position: Chr02:14479647..14479722 (+ strand)
Length: 76
Type: CDS
Position: Chr02:14479808..14479902 (+ strand)
Length: 95
Type: CDS
Position: Chr02:14482598..14482669 (+ strand)
Length: 72
Type: CDS
Position: Chr02:14482948..14483057 (+ strand)
Length: 110
Type: CDS
Position: Chr02:14483835..14483957 (+ strand)
Length: 123
Type: CDS
Position: Chr02:14484039..14484131 (+ strand)
Length: 93
Type: CDS
Position: Chr02:14484467..14484535 (+ strand)
Length: 69
Type: CDS
Position: Chr02:14484660..14484748 (+ strand)
Length: 89
Type: CDS
Position: Chr02:14484860..14484957 (+ strand)
Length: 98
Type: CDS
Position: Chr02:14486899..14487030 (+ strand)
Length: 132
Type: CDS
Position: Chr02:14487031..14487370 (+ strand)
Length: 340
Type: three_prime_UTR


>Vigan.02G154200.01
TTTAAATTTA TAGGCTACAC TTACAGTGAA TAAAATTGAG GGTTGATGAA CTTCTGAAAC ATCACGCAGA GGAAGAGGAA
GAGGAAGAGG AAGAGGGTTT TTTGAGGAAT GAGTCAGTCA ACACACCAGC GGTTGTATGA TTTTGCAAAA ACGGCTCTCA
TAAACATATT CGCTCACCCT TACGCCACGG TGTGCGATTT GTATTGTGCT GATTCCGGTT CTGATAAATG GGTCGACGCG
CAAATTGGCC ACTACATTGG AATTGACGCG TCTTCGTCTG GGATAGAGCA AATGCGAGAA GCTTGGGAGA GTCACAGGAA
ATCTTACACT GCCCAGTTCT TCCAGGTCGA CCCTTCCGTG GAGAATATAG AAACACATTT GGAGGAGAAA ATCAATGTGG
CTGATGTTGT CTGCTGTTTG CAGCATTTGC AGTTGTGTTT TGAGACTGAA GAGAAAGCAC GGAAACTACT GCATAATGTG
TCATCTCTGC TGAAACCCGG GGGTTATTTT CTTGGTATTA CTCCTGACTC ATCTACCATA TGGGCTAAAT ACCAGAGGAA
TGTTGAAGCC TATCACAACA AAAGCAGCAG CATGAAGCCA AACATTGTTC CCAACTGCAT CCGGACCGAG AATTACATGA
TTACTTTTGA AGTTGAAGAA GAAAAGTTTC CGTTATTTGG AAAGAAGTAC CAGCTAAAAT TTGCTAATGA TATCTCTGCT
GAAACTAATT GCTTGGTTCA TTTTCCAAGT TTCATCAGGT TGGCCAGGGA AGCTGGCCTT GAGTATGTGG AGATTCAAAA
TCTAACCGAA TTTTATGACG ACAACAGAGC ACAATTAGCT GGCTTGTTAA CACACTATGT TCCAAACCTC TTGGATCCGA
GGGGAAGACT TCTTCCACGG TCATACGATG CGCTAGGTCT CTATACCACT TTTATATTTC TAAAGCCTGA CCCAGAAATT
GCACCCCCAG TTGCGACTCC ATTATTGCAA GATGCAAGTT ATAATCACGA TGAGGGAACC AGTAGTCGAG ATGATGAAAT
AATAAATGGT CATGTAGAAC CCGCTATTGG GCTGGGCAAG ATAAGCGAAC AGAAAGGAAT ATTGGGCCCA GGTCCAGCAG
ATTTACGTTT TCCAGAAGCA CTTTGAATGT TCTCCGGAAG CTAAAGTTTT AGGTAATTTT GCTTTTTCTG ATGCAACCAA
TATTTTATTT TATTAGCAAA AAGAAGAAGG AAGTTAGGTG TTCTCTTCCT TTTTAAAATG GTAAAGGTTG TTAGGGTAGG
TGTTTTTTTA ACTTCTTTTG TAGTCAGTGT GAAAGGATTA GTTCACTTTG CCATGTATTT TCACTCTCCA CTTAGTCTTT
CTTCCCAAAT ATGTCTCCAA AACAGTAGAA TTAAAAAATG TAATGATGAA CAAGTTTTAA TCAATTGCAC TTTCTTCGAA
ATTGGGATAA CATGAAGTCA ATGTTACTGG TCCTGTCTTA TTTCCC

>Vigan.02G154200.01
ATGAGTCAGT CAACACACCA GCGGTTGTAT GATTTTGCAA AAACGGCTCT CATAAACATA TTCGCTCACC CTTACGCCAC
GGTGTGCGAT TTGTATTGTG CTGATTCCGG TTCTGATAAA TGGGTCGACG CGCAAATTGG CCACTACATT GGAATTGACG
CGTCTTCGTC TGGGATAGAG CAAATGCGAG AAGCTTGGGA GAGTCACAGG AAATCTTACA CTGCCCAGTT CTTCCAGGTC
GACCCTTCCG TGGAGAATAT AGAAACACAT TTGGAGGAGA AAATCAATGT GGCTGATGTT GTCTGCTGTT TGCAGCATTT
GCAGTTGTGT TTTGAGACTG AAGAGAAAGC ACGGAAACTA CTGCATAATG TGTCATCTCT GCTGAAACCC GGGGGTTATT
TTCTTGGTAT TACTCCTGAC TCATCTACCA TATGGGCTAA ATACCAGAGG AATGTTGAAG CCTATCACAA CAAAAGCAGC
AGCATGAAGC CAAACATTGT TCCCAACTGC ATCCGGACCG AGAATTACAT GATTACTTTT GAAGTTGAAG AAGAAAAGTT
TCCGTTATTT GGAAAGAAGT ACCAGCTAAA ATTTGCTAAT GATATCTCTG CTGAAACTAA TTGCTTGGTT CATTTTCCAA
GTTTCATCAG GTTGGCCAGG GAAGCTGGCC TTGAGTATGT GGAGATTCAA AATCTAACCG AATTTTATGA CGACAACAGA
GCACAATTAG CTGGCTTGTT AACACACTAT GTTCCAAACC TCTTGGATCC GAGGGGAAGA CTTCTTCCAC GGTCATACGA
TGCGCTAGGT CTCTATACCA CTTTTATATT TCTAAAGCCT GACCCAGAAA TTGCACCCCC AGTTGCGACT CCATTATTGC
AAGATGCAAG TTATAATCAC GATGAGGGAA CCAGTAGTCG AGATGATGAA ATAATAAATG GTCATGTAGA ACCCGCTATT
GGGCTGGGCA AGATAAGCGA ACAGAAAGGA ATATTGGGCC CAGGTCCAGC AGATTTACGT TTTCCAGAAG CACTTTGA

>Vigan.02G154200.01
MSQSTHQRLY DFAKTALINI FAHPYATVCD LYCADSGSDK WVDAQIGHYI GIDASSSGIE QMREAWESHR KSYTAQFFQV
DPSVENIETH LEEKINVADV VCCLQHLQLC FETEEKARKL LHNVSSLLKP GGYFLGITPD SSTIWAKYQR NVEAYHNKSS
SMKPNIVPNC IRTENYMITF EVEEEKFPLF GKKYQLKFAN DISAETNCLV HFPSFIRLAR EAGLEYVEIQ NLTEFYDDNR
AQLAGLLTHY VPNLLDPRGR LLPRSYDALG LYTTFIFLKP DPEIAPPVAT PLLQDASYNH DEGTSSRDDE IINGHVEPAI
GLGKISEQKG ILGPGPADLR FPEAL*