GBrowse Details

Vigan.02G161100.01

Basic Information:
Name: Vigan.02G161100.01
Multiple alignment
Variant Information
Position: Chr02:15426339..15428347 (- strand)
Length: 2009
Functional Information:
Description: Similar to Uncharacterized protein. [I1JYP1, Glycine max]
InterPro: Pentapeptide repeat (IPR001646)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.19,38.47,21.30,100.84,10.24,20.10,2.47,20.74
Arabidopsis thaliana homolog: AT5G53490.3
Automatic updates:
Name: NM_001254972 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thylakoid lumenal 17.4 kDa protein, chloroplastic-like (LOC100785667), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:15426339..15426600 (- strand)
Length: 262
Type: three_prime_UTR
Position: Chr02:15426601..15426824 (- strand)
Length: 224
Type: CDS
Position: Chr02:15427227..15427473 (- strand)
Length: 247
Type: CDS
Position: Chr02:15427899..15428035 (- strand)
Length: 137
Type: CDS
Position: Chr02:15428205..15428307 (- strand)
Length: 103
Type: CDS
Position: Chr02:15428308..15428347 (- strand)
Length: 40
Type: five_prime_UTR


>Vigan.02G161100.01
TTTCAAAACT GAAGTGAAGA GTGAAGAAGA GACAAGAACA ATGGCCAACG TTTCAATTCC ACTCCCTCGA AACGGTTTCT
GCATACCCAG TTACACAACC AAACGCCCAT CTTTCACCCC TCCACTCACA ATTTCTTGCT CTGGAGTAGC TGACTTAGAT
GGATCTCATC AGAATAAGGG AGGTTTCTTC AGTTTCAATG GAATGAAGGG CGTGGCCTGT GGTATTCTTG CAGCTTGTGC
TGTTACTTCT GCTGCATTTC CCGTTACTGC TGCTACCCAG AGACTTCCCC CATTGTCGAC TGAGCCCAAT CGCTGTGAGC
GTGCATTTAT TGGCAACACA ATTGGTCAGG CAAATGGTGT ATACGATAAA CCATTAGATC TCCGGCAATG TGATTTCACA
AATGAAAAAT CCAACCTCAA GGGGAAGTCC CTCTCTGCAG CACTCATGTC GGATGCTAAG TTTGATGGTG CTGATATGAC
AGAAGTTATA ATGTCTAAGG CTTATGCTGC TGGTGCCAGC TTTAAAGGGG TGGACTTCTC AAATGCAGTG TTGGACCGTG
TGAACTTCGA GAAAGCTGAT CTTGAAGGAG CTGTATTTAA GAACACAGTA TTGTCGGGCT CCACCTTTGA CGAGGCTAAG
CTGGACAAGG CAGTTTTTGA GGACACTATT ATTGGTTATA TTGATCTCCA GAAACTCTGC ACAAACAAGT CCATCAATGA
TGAAGGGAGA GCTGAACTAG GATGTCGATG AAAAGAACTA AAGTATGCTG CTATGCCATG ACGTACCACA GCTATTTTGA
TGAGGGTAGC CAGTGGATTA ATGTTACGTC CGAAAGAAAA TTTAATTCTT TGCTTTTCTT GCATGATGTT GCATAACTTT
GTAGTATTCC TCGTGATTTT AACATATAAA TCCAAGTATA TTTGATCATT TTACATGTAT TTGATTGTAC AATATCCAGT
TGATTCTAAA CAACCTTGTT AACTTTTCAG TTTTCGCCAT GACTTAGATA AGG

>Vigan.02G161100.01
ATGGCCAACG TTTCAATTCC ACTCCCTCGA AACGGTTTCT GCATACCCAG TTACACAACC AAACGCCCAT CTTTCACCCC
TCCACTCACA ATTTCTTGCT CTGGAGTAGC TGACTTAGAT GGATCTCATC AGAATAAGGG AGGTTTCTTC AGTTTCAATG
GAATGAAGGG CGTGGCCTGT GGTATTCTTG CAGCTTGTGC TGTTACTTCT GCTGCATTTC CCGTTACTGC TGCTACCCAG
AGACTTCCCC CATTGTCGAC TGAGCCCAAT CGCTGTGAGC GTGCATTTAT TGGCAACACA ATTGGTCAGG CAAATGGTGT
ATACGATAAA CCATTAGATC TCCGGCAATG TGATTTCACA AATGAAAAAT CCAACCTCAA GGGGAAGTCC CTCTCTGCAG
CACTCATGTC GGATGCTAAG TTTGATGGTG CTGATATGAC AGAAGTTATA ATGTCTAAGG CTTATGCTGC TGGTGCCAGC
TTTAAAGGGG TGGACTTCTC AAATGCAGTG TTGGACCGTG TGAACTTCGA GAAAGCTGAT CTTGAAGGAG CTGTATTTAA
GAACACAGTA TTGTCGGGCT CCACCTTTGA CGAGGCTAAG CTGGACAAGG CAGTTTTTGA GGACACTATT ATTGGTTATA
TTGATCTCCA GAAACTCTGC ACAAACAAGT CCATCAATGA TGAAGGGAGA GCTGAACTAG GATGTCGATG A

>Vigan.02G161100.01
MANVSIPLPR NGFCIPSYTT KRPSFTPPLT ISCSGVADLD GSHQNKGGFF SFNGMKGVAC GILAACAVTS AAFPVTAATQ
RLPPLSTEPN RCERAFIGNT IGQANGVYDK PLDLRQCDFT NEKSNLKGKS LSAALMSDAK FDGADMTEVI MSKAYAAGAS
FKGVDFSNAV LDRVNFEKAD LEGAVFKNTV LSGSTFDEAK LDKAVFEDTI IGYIDLQKLC TNKSINDEGR AELGCR*