VIGGS:GBrowse

Vigan.02G162800.01

Basic Information:

Name:	Vigan.02G162800.01 Multiple alignment Variant Information
Position:	Chr02:15746690..15749670 (+ strand)
Length:	2981

Functional Information:

Description:	Similar to Uncharacterized protein. [I3SL06, Medicago truncatula]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	F-box domain (IPR001810)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:14.91,4.69,13.00,24.61,14.43,7.43,20.67,12.03

Automatic updates:

Name:	NM_001249064 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max F-box domain-containing protein (LOC100500296), mRNA.
PubMed ID:	15060591 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:15746690..15746895 (+ strand)
Length:	206
Type:	five_prime_UTR

Position:	Chr02:15746896..15746998 (+ strand)
Length:	103
Type:	CDS

Position:	Chr02:15748174..15748333 (+ strand)
Length:	160
Type:	CDS

Position:	Chr02:15749186..15749435 (+ strand)
Length:	250
Type:	CDS

Position:	Chr02:15749436..15749670 (+ strand)
Length:	235
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G162800.01
CCAACATATA CCTACGCGCG AAAATAATGT AATAATAATA TTATATTATA AAATAACCAA AGCTGTTGTG GATTCTTGTA
TTCCTCCTAC TAGAAGCAAC TAACAAAAAA CAACAAAAAT GAGTGTTTTG TTAGTATTAT GATTGCACAG ACAGAATCCA
AGGAAACGAA ACTCGTGAGT GTTATTTGGA AGAATTATGT GAGTTTATGA TTATTTTCAA GTTGTCGAAA ATGGAGAGGT
TGCCTGTGGA AATATGTACG AAGATATTCG GTCTCTTGGA TTACTACCAT CTTTCTGTTG CTCAACAAGT GTGTAGGAAG
TGGAAGCTGG TGGGCTCAGA CAATGATCTA TGGTGTAACC TTTTTAGAGA GAGATGGGGA GAAGATCATT CTGCTTTTTA
TGCTCCTATT GGCTCAAAAT CATGGAAAGA TGTATATGAG GTGCAAGATC GTTGTGATCG AATTGGAGTG GGTTTGAAGA
TTATTAGAGA AGGCAGTGAC TACTATCTTG TTCACCAAGG AGAGATACAG AGACATCTGG GTTCAAGAAA AAATCAGGAA
AAAGAAACCG CTCAAAGCTT CCATTCAGAA ATTGAATTCA ATGGAGAAAG CTGTCTAGCT GAAGAGAGAT CATGTCGTGG
AATTTTGGAC AAAATCCTTT TTTTCATAGG AGATTTGGAA GTTGCTTCTG CAGAAGCCAA ACGTAGCCGT GTCAGATGAT
AGTCTCTACC ATTCAATCCA CCACTCAAGT TCACTGGAAA ACTTCTTTGT ACCTAACCAT TATTTCATGT ATATATAATA
TACTTATCAA ACAATGTATT CAGTTATTTC AATAATTTAG CCTTTTCATA TAAGTCATGA GAATTATGAG GACCTTCATT
GCTTCTATCA TTTTGCCTCT CTACCTAGCG CTGCGATCAA TATGGAACAA GCTAAAGCTA CTATTTTATA ATTG

[show][hide][copy]CDS

>Vigan.02G162800.01
ATGATTATTT TCAAGTTGTC GAAAATGGAG AGGTTGCCTG TGGAAATATG TACGAAGATA TTCGGTCTCT TGGATTACTA
CCATCTTTCT GTTGCTCAAC AAGTGTGTAG GAAGTGGAAG CTGGTGGGCT CAGACAATGA TCTATGGTGT AACCTTTTTA
GAGAGAGATG GGGAGAAGAT CATTCTGCTT TTTATGCTCC TATTGGCTCA AAATCATGGA AAGATGTATA TGAGGTGCAA
GATCGTTGTG ATCGAATTGG AGTGGGTTTG AAGATTATTA GAGAAGGCAG TGACTACTAT CTTGTTCACC AAGGAGAGAT
ACAGAGACAT CTGGGTTCAA GAAAAAATCA GGAAAAAGAA ACCGCTCAAA GCTTCCATTC AGAAATTGAA TTCAATGGAG
AAAGCTGTCT AGCTGAAGAG AGATCATGTC GTGGAATTTT GGACAAAATC CTTTTTTTCA TAGGAGATTT GGAAGTTGCT
TCTGCAGAAG CCAAACGTAG CCGTGTCAGA TGA

[show][hide][copy]PROTEIN

>Vigan.02G162800.01
MIIFKLSKME RLPVEICTKI FGLLDYYHLS VAQQVCRKWK LVGSDNDLWC NLFRERWGED HSAFYAPIGS KSWKDVYEVQ
DRCDRIGVGL KIIREGSDYY LVHQGEIQRH LGSRKNQEKE TAQSFHSEIE FNGESCLAEE RSCRGILDKI LFFIGDLEVA
SAEAKRSRVR *