GBrowse Details

Vigan.02G163000.01

Basic Information:
Name: Vigan.02G163000.01
Multiple alignment
Variant Information
Position: Chr02:15793196..15795976 (+ strand)
Length: 2781
Functional Information:
Description: Similar to Uncharacterized protein. [I1KAW9, Glycine max]
InterPro: Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.45,0.37,13.08,254.13,0.35,10.67,2.31,47.60
Arabidopsis thaliana homolog: AT4G27700.1
Automatic updates:
Name: NM_001289195 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max rhodanese-like domain-containing protein 14, chloroplastic-like (LOC100797443), mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:15793196..15793459 (+ strand)
Length: 264
Type: five_prime_UTR
Position: Chr02:15793460..15793667 (+ strand)
Length: 208
Type: CDS
Position: Chr02:15793790..15793836 (+ strand)
Length: 47
Type: CDS
Position: Chr02:15794129..15794221 (+ strand)
Length: 93
Type: CDS
Position: Chr02:15794396..15794534 (+ strand)
Length: 139
Type: CDS
Position: Chr02:15794619..15794721 (+ strand)
Length: 103
Type: CDS
Position: Chr02:15795280..15795394 (+ strand)
Length: 115
Type: CDS
Position: Chr02:15795395..15795976 (+ strand)
Length: 582
Type: three_prime_UTR


>Vigan.02G163000.01
AAAAGAGAGA GATAATGATG AGATGGCAAA GATATCCAAA TGTTAAAGCA CTCGTAAAAC CTCAACCACA ATCTCAGATT
CTGTGCCCTA AATATCCTGA GTAAGCTGAT ACTCTTCTCA CACAAACTAC CTTCAGTACT CTGTATAACA CAAGCACCAC
CCCTGATCCT TTCACACTAA TTCAATCATT GAATATTACC CTTTATTAAC TACAACATTT GAAGTCTCAT ATTTTATTCT
TCGCTCGAAA CTGAACCACC AAGCATGGCA GCTTTTACAC CAATTGCTCT ACAGTACTCA TCTACATCAT CTTTGCATTC
TTTGCTACCT TCTTTAGAAG CTTCACGTGA TCATAATTCA TGGTGGGGGA AAGTGAGATC ATACAAATCC GCAGGAAAAA
GATCACTTCA ACAGAATATC ACAAGGGGTT TGACAATCCA GAGTGCAGCC ACAAAACCAG CAAAGTCGCC AGCTGAAGAA
GACTGGAAGG TTAAGCGAGA ATATCTGGTG CAAAAAAGGG TAAGAAGTGT GGATGCAAAG GAAGCTCTGC GGCTTCAAAA
AGAAAATAAT TTTGTGATTC TCGACGTAAG GCCAGAAGCA GAGTTCAAAG AGGCTCATCC TCCAGATGCT ATCAATGTGC
AAATATACAG GCTTATAAAG GAGTGGACAG CATGGGACAT TGCAAGACGT GCAGCATTTG CTTTTTTTGG TATTTTTTCC
GGGACTGAAG AGAACCCTGA GTTCATCCAG AGTGTTGAAG CAAAGTTGGA TAAAAATGCA AAGATAATAG TAGCTTGCTC
AGCTGGAGGT ACATTGAAAC CATCACAAAA TCTGCCCGAA GGTCAACAAT CAAGGTCTCT CATAGCAGCT TACTTGCTGG
TCCTTAATGG ATTTTCCAAT GTCTTCCATC TTGAAGGTGG TCTTTACTCG TGGTTTAAAG AGGATCTGCC AAGTGTTTCA
GAGGAGTAAA TGTAGTGCCA AGAATGTGTA TTAGTGAAGC GTAGACCTAG TTTTGACCAT GATGAAAATA CTGATAAATG
CATATAAAGA GTGGAACCAA CGATTGAAAT GTCATTATTG AAGTAGTGCG GAAAACTAGT ATGCAAGAAT TGACAACAAA
AATATCAGGT TACATTTCTG TAAAGATTGC ATTCCTAGCT TAAACTGTTA AAGGTTCAAT AATTTAGTAT GCATAAACCA
TGTTTCTGAG CAACTGATGC ATACTGCTTC AATGAATAAA CCAAAATTCG CATTAAAGCA TTTTCTGGTT CAGTTGCAAT
CGCTTCCTAT AGATGATCAA CTAAAAAATA ACGTTTGGGA AAAAGCTATT TGGTTAAACC TATTATTGCC TAAGCCTTTA
AAGAAGCTCT CGCCATGGCT ACAGCTCCAT CATAACTTCG ATTTCCTCCA ATAAAACCAC TCATGTGTAC AAAAGTACAA
CCTGGGATTC CAGCAACCTC AGACAGCTTG TCATTTTCCA AACCCCTCCA TAAATACGGT AACGGTTTTC TGCTCTCAAA
TCTGGCAGGT GAAATTGCCA CTGCCTGCAG T

>Vigan.02G163000.01
ATGGCAGCTT TTACACCAAT TGCTCTACAG TACTCATCTA CATCATCTTT GCATTCTTTG CTACCTTCTT TAGAAGCTTC
ACGTGATCAT AATTCATGGT GGGGGAAAGT GAGATCATAC AAATCCGCAG GAAAAAGATC ACTTCAACAG AATATCACAA
GGGGTTTGAC AATCCAGAGT GCAGCCACAA AACCAGCAAA GTCGCCAGCT GAAGAAGACT GGAAGGTTAA GCGAGAATAT
CTGGTGCAAA AAAGGGTAAG AAGTGTGGAT GCAAAGGAAG CTCTGCGGCT TCAAAAAGAA AATAATTTTG TGATTCTCGA
CGTAAGGCCA GAAGCAGAGT TCAAAGAGGC TCATCCTCCA GATGCTATCA ATGTGCAAAT ATACAGGCTT ATAAAGGAGT
GGACAGCATG GGACATTGCA AGACGTGCAG CATTTGCTTT TTTTGGTATT TTTTCCGGGA CTGAAGAGAA CCCTGAGTTC
ATCCAGAGTG TTGAAGCAAA GTTGGATAAA AATGCAAAGA TAATAGTAGC TTGCTCAGCT GGAGGTACAT TGAAACCATC
ACAAAATCTG CCCGAAGGTC AACAATCAAG GTCTCTCATA GCAGCTTACT TGCTGGTCCT TAATGGATTT TCCAATGTCT
TCCATCTTGA AGGTGGTCTT TACTCGTGGT TTAAAGAGGA TCTGCCAAGT GTTTCAGAGG AGTAA

>Vigan.02G163000.01
MAAFTPIALQ YSSTSSLHSL LPSLEASRDH NSWWGKVRSY KSAGKRSLQQ NITRGLTIQS AATKPAKSPA EEDWKVKREY
LVQKRVRSVD AKEALRLQKE NNFVILDVRP EAEFKEAHPP DAINVQIYRL IKEWTAWDIA RRAAFAFFGI FSGTEENPEF
IQSVEAKLDK NAKIIVACSA GGTLKPSQNL PEGQQSRSLI AAYLLVLNGF SNVFHLEGGL YSWFKEDLPS VSEE*