GBrowse Details

Vigan.02G163300.01

Basic Information:
Name: Vigan.02G163300.01
Multiple alignment
Variant Information
Position: Chr02:15806746..15813767 (- strand)
Length: 7022
Functional Information:
Description: Similar to ATPase family AAA domain-containing protein 1-A-like isoform X1. [XP_004502708.1, Cicer arietinum]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: AAA+ ATPase domain (IPR003593)
ATPase, AAA-type, core (IPR003959)
ATPase, AAA-type, conserved site (IPR003960)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.17,11.11,5.47,6.00,10.09,5.50,9.69,4.53
Arabidopsis thaliana homolog: AT4G27680.1, AT5G53540.1
Automatic updates:
Name: NM_001255751 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATPase family AAA domain-containing protein 1-A-like (LOC100788677), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255888 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATPase family AAA domain-containing protein 1-A-like (LOC100796908), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:15806746..15808148 (- strand)
Length: 1403
Type: three_prime_UTR
Position: Chr02:15808149..15808373 (- strand)
Length: 225
Type: CDS
Position: Chr02:15809129..15809424 (- strand)
Length: 296
Type: CDS
Position: Chr02:15809565..15809723 (- strand)
Length: 159
Type: CDS
Position: Chr02:15812053..15812353 (- strand)
Length: 301
Type: CDS
Position: Chr02:15813404..15813601 (- strand)
Length: 198
Type: CDS
Position: Chr02:15813602..15813767 (- strand)
Length: 166
Type: five_prime_UTR


>Vigan.02G163300.01
TGATTCTTGA CTTTTCTTTC TTACTTTGTT TCTGTTCGAA TTTGAGTTTT AAGAACCCTC GGTCATTGTT CCTCGCCACA
ATTACAAAAA GAATTAAGGA AGAAGGAATT TTGATGATAT TATCGTATCA TAAATTGGAG TTTTGATTTT TATTGTTGAA
CGAAGAATGG GAGGTTCATC GGAGACGAAG TTCTTGCAGG ACCTGTTGTT GTACGCTGCG AGCGCGGCGT TGAGTTGCTT
GGTGTTGTTC GCGGGACTCA GACACCTCGA TCCTAATCGC GAAGCTTCCA AAAAGGTTCT TGAGCACAAG AAAGAGATTG
CAAAGCGTCT AGGTCGCCCC CTTATTCAGA CTAACCCTTA TGAGGATGTT ATAGCCTGTG ATGTTATAAA TCCTGACCAC
ATTGATGTGG AGTTTAATTC TATTGGGGGA CTGGAAACCA TCAAGCAAGC TTTGTTTGAG CTTGTTATTC TGCCTCTAAA
AAGACCAGAT TTGTTTTCAC ATGGTAAGCT TCTTGGACCA CAAAAGGGGG TTCTGTTGTA TGGACCACCT GGCACTGGAA
AAACCATGCT TGCCAAAGCT ATTGCTAAGG AGTCGGGAGC AGTTTTTATC AATGTGAGGA TATCAAACCT TATGAGCAAG
TGGTTTGGGG ATGCCCAAAA GCTTGTGGCT GCGGTATTTA GCCTGGCTTA TAAGCTTCAG CCTGCCATCA TTTTCATTGA
TGAAGTAGAC AGTTTTTTGG GTCAACGCCG TACAACAGAT CATGAGGCTT TGTTAAACAT GAAAACTGAG TTTATGGCTC
TGTGGGACGG ATTTACTACG GATCAGAATG CTCGAGTTAT GGTTCTTGCA GCGACAAACC GTCCTTCAGA ACTTGATGAA
GCAATACTAC GACGTCTTCC TCAAGCCTTT GAAATCGGAA TTCCTGACCA AAGGGAGAGG ACTGAAATAT TGAAGGTTAT
CTTAAAGGGT GAGAGGGTTG AAGACAACAT AGAGTTTGGT CATATAGCAG GCTTGTGTGA GGGTTACACT GGTTCAGATC
TATTTGATCT TTGCAAGAAA GCTGCCTATT TTCCTATTAG AGAACTGCTA GATGAAGAGA AGAAAGGAAA ACGATCTCCT
GCACCTAGAC CTTTGTCCCA GTTAGATTTG GAGAAGGCCA TTGCCACTTC ACAGAAGACA AAGGTTGCTG CAAGTGAATA
CGCTGGATTC AGCCTTCAGT CACCTTCAAG ATGGTCGGTG CCTGGTGATT CAGGTGATTC TCAGATTCAG GCTGCAATCA
ATGTATTCTC TAAGCTTGTG GTTTCTCACA TGATTAACCT CCAACCAGAA TCCCAAGATC CTTAAAATAT TCACTTTCTT
TAGAGCATTC TTCTATGGTC ATTTAGCCTA GTTCAGATTG TACTAGTGAT TGCTTACTTA TACTAATTAT AGGAACATAT
ATTTGTTATA CATTGATTAT AAAAGTGCCA TGGTTGGCTA TTGCATTTTA TTCTGTATTT TATTTGACGC GTCAATCATT
CATGTAGCAC TTCCATTTAT GCCAAAACTG ATCTCTGATT ACTATTTGAG TACATGCAGA GATAATTTTT CAATTTTGTT
GTTCCACCCT CCTCTGTGTA TTGTATACTA TAACATGATG CTATAAAATG ACATAAAACG GTAGCTAATG TCTATTTCAG
GTGTCAGATC CGTCAACATT CCATGACATT GTATAATAAA ACAAACATAC AAAAGAAGGG ATTAAAAAAT TCCCATCTGG
CCGAGCAGTT AGGTGGACTC AAGGTTGAAT TTTTACGCTT TCTATTCTGT TTAGCATGTG GATAGGGAAA AATATGTCAT
TATTTAAGTC AGCTCTACAT CACTCTTCTT CCAGTCCTAT ATACACTACT AGCATGAGCA AAAGTTCATA TATACTGTTT
TATTATGTAA TTAATCTATG ATTAGTACAA TTGGATCTAA CACTTGATGC CCAATAACTT GAACAGACTA AGGCTTAAGA
CTGATCAAGA CGGTGCAGTG TGTATCAAGT TGTTGCCAAC AGCCATCAAT TATTGAGACC TCGGAGAAAT AACTGGCATT
GGAGTGGGTT CAGCAGGGTT ATAATTTTAA GCAGTGGGTC AGTTATCATC GTTGTGCTTT TGTTGTCTTT CTGGTCCACC
CGCATATGCT GATGATTAAT TCAAACCCTT GAAAGTTGCG AGTTCTTCCC ATCACATTCA TTCGTTGTGT GACCACAAAT
TTGTACTTTT TTTTCCCTCT CAAACATGAT TTCTACAGTG TAGACAGGAC CACTACGTGG GGGGCGTATC TTCCTCACTT
TGTTCCGGCT GATGCCTGCC TCGTGCTTCC ATCATTACTC AACCACTTTT TATGTTTGAG GGGAAAAGCT AAAGTTAAAC
AGCCAATAAA TGTAAGGTAA CAGAGTAATA AAATATAGTA CACAATTGAT CACAATCCCA GAAGGAACAA CATCTCTTTC
TTTTCAGACA TTAGGATTTT GAAGTTGCAA GTGACTATTC TGTTCGAAAT ATCCCCGTCC TTGTCAAAGA CCTGCGAGTC
GTGTGTAGAA AACACCCTTG CAGATTATAG GACACAGACT GAAAGGGCCA TGACAACTCT GTATTTCTTC AATGTTATGA
CAGTTTAGTT TATGGGGATT TTCGATTTTT AATGGCCACA ATCATTTTCT GGATTTTTAT TTTTAAATTA ATTGAGCTTG
TGACGCATTG AGTCGTTAAT GGTCTAAA

>Vigan.02G163300.01
ATGGGAGGTT CATCGGAGAC GAAGTTCTTG CAGGACCTGT TGTTGTACGC TGCGAGCGCG GCGTTGAGTT GCTTGGTGTT
GTTCGCGGGA CTCAGACACC TCGATCCTAA TCGCGAAGCT TCCAAAAAGG TTCTTGAGCA CAAGAAAGAG ATTGCAAAGC
GTCTAGGTCG CCCCCTTATT CAGACTAACC CTTATGAGGA TGTTATAGCC TGTGATGTTA TAAATCCTGA CCACATTGAT
GTGGAGTTTA ATTCTATTGG GGGACTGGAA ACCATCAAGC AAGCTTTGTT TGAGCTTGTT ATTCTGCCTC TAAAAAGACC
AGATTTGTTT TCACATGGTA AGCTTCTTGG ACCACAAAAG GGGGTTCTGT TGTATGGACC ACCTGGCACT GGAAAAACCA
TGCTTGCCAA AGCTATTGCT AAGGAGTCGG GAGCAGTTTT TATCAATGTG AGGATATCAA ACCTTATGAG CAAGTGGTTT
GGGGATGCCC AAAAGCTTGT GGCTGCGGTA TTTAGCCTGG CTTATAAGCT TCAGCCTGCC ATCATTTTCA TTGATGAAGT
AGACAGTTTT TTGGGTCAAC GCCGTACAAC AGATCATGAG GCTTTGTTAA ACATGAAAAC TGAGTTTATG GCTCTGTGGG
ACGGATTTAC TACGGATCAG AATGCTCGAG TTATGGTTCT TGCAGCGACA AACCGTCCTT CAGAACTTGA TGAAGCAATA
CTACGACGTC TTCCTCAAGC CTTTGAAATC GGAATTCCTG ACCAAAGGGA GAGGACTGAA ATATTGAAGG TTATCTTAAA
GGGTGAGAGG GTTGAAGACA ACATAGAGTT TGGTCATATA GCAGGCTTGT GTGAGGGTTA CACTGGTTCA GATCTATTTG
ATCTTTGCAA GAAAGCTGCC TATTTTCCTA TTAGAGAACT GCTAGATGAA GAGAAGAAAG GAAAACGATC TCCTGCACCT
AGACCTTTGT CCCAGTTAGA TTTGGAGAAG GCCATTGCCA CTTCACAGAA GACAAAGGTT GCTGCAAGTG AATACGCTGG
ATTCAGCCTT CAGTCACCTT CAAGATGGTC GGTGCCTGGT GATTCAGGTG ATTCTCAGAT TCAGGCTGCA ATCAATGTAT
TCTCTAAGCT TGTGGTTTCT CACATGATTA ACCTCCAACC AGAATCCCAA GATCCTTAA

>Vigan.02G163300.01
MGGSSETKFL QDLLLYAASA ALSCLVLFAG LRHLDPNREA SKKVLEHKKE IAKRLGRPLI QTNPYEDVIA CDVINPDHID
VEFNSIGGLE TIKQALFELV ILPLKRPDLF SHGKLLGPQK GVLLYGPPGT GKTMLAKAIA KESGAVFINV RISNLMSKWF
GDAQKLVAAV FSLAYKLQPA IIFIDEVDSF LGQRRTTDHE ALLNMKTEFM ALWDGFTTDQ NARVMVLAAT NRPSELDEAI
LRRLPQAFEI GIPDQRERTE ILKVILKGER VEDNIEFGHI AGLCEGYTGS DLFDLCKKAA YFPIRELLDE EKKGKRSPAP
RPLSQLDLEK AIATSQKTKV AASEYAGFSL QSPSRWSVPG DSGDSQIQAA INVFSKLVVS HMINLQPESQ DP*