GBrowse Details

Vigan.02G164100.01

Basic Information:
Name: Vigan.02G164100.01
Multiple alignment
Variant Information
Position: Chr02:16021997..16024674 (+ strand)
Length: 2678
Functional Information:
Description: Similar to uncharacterized protein. [A5AZI0, Vitis vinifera]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Ribosomal protein L40e (IPR001975)
Zinc-binding ribosomal protein (IPR011332)
Ubiquitin conserved site (IPR019954)
Ubiquitin (IPR019956)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:77.26,111.61,141.95,84.40,228.89,275.28,133.77,78.42
Automatic updates:
Name: NM_001250830 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306626 (LOC100306626), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:16021997..16022149 (+ strand)
Length: 153
Type: five_prime_UTR
Position: Chr02:16022150..16022252 (+ strand)
Length: 103
Type: CDS
Position: Chr02:16022341..16022427 (+ strand)
Length: 87
Type: CDS
Position: Chr02:16022784..16022886 (+ strand)
Length: 103
Type: CDS
Position: Chr02:16024220..16024286 (+ strand)
Length: 67
Type: CDS
Position: Chr02:16024377..16024403 (+ strand)
Length: 27
Type: CDS
Position: Chr02:16024404..16024674 (+ strand)
Length: 271
Type: three_prime_UTR

>Vigan.02G164100.01 class=Sequence position=Chr02:16021997..16024674 (+ strand)
AAAAAGAATA AAGAAATAGG TCTGGAATAA CATAATCCGG CTAACCAAAC ACACCCTAGG TTCTGAAAAC CCTACTACTC
TTAACGCTTC AATATAAATA TTACGTACAA CCAAGCGAGA AACCCTAATA GCAGTTTGGG AAGATAAGGA AAGATGCAGA
TCTTCGTGAA AACCCTAACG GGGAAGACCA TCACCCTTGA GGTGGAGTCA AGTGACACCA TTGATAATGT CAAAACAAAG
ATTCAGGACA AAGAAGGTGC AGTTTAATCA AAACGGTACC ATTGATTAGT CGTTCTCTCT TATTCGTTCT TGGTTTGACT
CGTTCTGTTT CATTCTCTTT CCAGGAATTC CCCCGGACCA GCAGAGGTTG ATCTTTGCGG GAAAACAGCT GGAGGATGGC
CGTACTCTCG CCGATTACAA CATCCAAAAA GGTATGCCAA ATCTCAATTT CGAAATTCGT GTCGTTTGGC CTTGTTAATT
GCTCTAATGC TTTGAATGCG GTAATTGTTC GATTTGTTTT TTTTAGATAG ATTTTAGGAA TCGTAGTTAG CCATATACGT
GTGTAGGTGA TTGGGTGGAA ATCTGTAGTT TTTAAATTGA TAAGAATTAA CATAAATTTT TTTATGAATA TGACAATCAG
ATACTTTTTA CTTTATTGTG TCCGACTCCA AGCACTTTCG TGCTGCTTGG CTGAGAAAGA GCAGGCCTCA AGTATTGTTA
ATTATGCTCA AATACTTTAG TGTAAATTGT GAGACTTATC ATTGTGTTGG TTTCTCTATT TTTGCAGAGT CAACATTGCA
TCTTGTTTTA AGGCTTCGTG GTGGTATTAT TGAGCCATCT TTGATGGCAT TGGCCAGAAA GTATAACCAG GATAAGATGA
TCTGTCGCAA GTAAGTTTAC ACATCCTAGT ATTGGATCCA GTTGGTTCAT CCAGAACTAA TTTGAAATAT TTTTCTTAAT
TTGAATTATG CTCTTGTGTG AAGTATAGTC ATAGCAGACA AAAAAAACTT TTTATATTGT TTAAGAAAGT CACATGAAAC
TCAATGTTGC AAGCCTAATC TGTCTGCAAG CAGTGTACTG ATTTCATATA TAAATGCTGA ATGCTGAATG AGGTGCTTGT
CTACACTGGA TGTCTGTATG AAAAATGTAT GGCAACATCA GGTTGTTGTT TTCTTTTAGC TACGTGTATC TGGAAATCCC
TGTGAGAAGG TATTGTGGCT CTCTACTCAG CCACTGTATC GAAGACCTAT GTTTTGTTCC TTATACCATG TTCCCACCCA
CCTCTAGCAT GTTGGTTAAT TTTAACCCTT TTATTTGTCT ACTCTTGTCC CACATCCACC CATTCTTGAT CAATCATTGC
GATGGATAAG GGGAGGGATG CTAAACTCTT CGTTCAGAAT AATTTATTTA CTATTCTAAT AACATTGTTT CACCCTTGGC
AAGGAATTAT TAACTAGCTA GAGTGACATC TAAATGATAA ATTTTTGTTA CAAGGGTAAA ATAGCATTTA TGTACCAGAG
AATACCCACA TATTCATAAT ATTCCTCCCC TTTATCTTCT TTCCTCTTAT TTCCCCCATC CAAGCCAAGT TTAAGTCCCT
TTTACCTTTG ACTTCATTAG ATGCATTGAA ATCTTGATGC GTATTAGGCT ATGAGCAGCT ATCTTTTTTA TAGCACCAGA
CATACGTAGC GAAAATGGAT TTTGAATAAT TGCTTAACTT GCTTAGGCAA TGCTGAATCA AAGGACAATT TCCTTTACAG
ATTAATTATT TTATGGAACT TGTTTGTAAT TTGGATTGAG AATATACAAT TCAATGCATC AAATCATATT TCCCTGTTGG
GAATTTCCAA AATGTTCTAT ATTGGACTTG AACTTCGTTT TTATAAAATG AATTTGATAT TAATAGGTTG CGAGCTTCAA
ATTAAGTGCA CTCTAAAAAG CATCAGTGTT TTCTTCTGGG TTACTTCTGT TTTAGTAAGG TGGTGTTGAA TTCCCATGTG
CTGTAAATCA AATGTAATCT GAAACAATAT ATTCTTAAAA AATGTCTTAG TAGTATTCAT AGCAAAACTC TGGTTCTTTT
GAGACTAAGG GATGCATGTT GGAATTCAAG TATTAGAAAG CCTACGTTAT ATACATTTGC TTAACTTATT CATGTTAAGT
GTCCATGACG ATTACTAATG TCCATTCACA GCCATTATGC TCATAAATCA ATATGCTTTG CAGGTGTTAC GCACGTTTAC
ACCCTCGTGC TGTGAACTGC AGGAAAAAGA AGTGTGGACA CAGCAACCAG GTATAATAAT TTTTTAGCGC CATATCTCAC
TACTCAAATT TTATGGAATG AAATTTCGAG TTATCTGAGG CTTTTACTTT TGTATTGCAG TTGAGGCCAA AGAAGAAGAT
CAAGTAAACT GTTCTCGTGT AAGATGCAAA CATGTTATGG ATTACTGGAT ATGGTGTAAA CCTGACAATT CCATTAGCTT
CTTAGTATCG TAGTTACTCA TTATTCTTGT TTTCAGTTTG AGACTCGTTA TGAATTATTC TACAGTTCCT TCTAATGGTG
ATACAATTTT GTTTTTGACA ATAATGCGTT TGAAGTGGAT GTTTCCCTGA CAATTTTTTT ATTACTTAAT TCCTTTTATT
TCCATTATAA GTTGTGGAAG GTCAGGCCCG TAATTTCG

>Vigan.02G164100.01
AAAAAGAATA AAGAAATAGG TCTGGAATAA CATAATCCGG CTAACCAAAC ACACCCTAGG TTCTGAAAAC CCTACTACTC
TTAACGCTTC AATATAAATA TTACGTACAA CCAAGCGAGA AACCCTAATA GCAGTTTGGG AAGATAAGGA AAGATGCAGA
TCTTCGTGAA AACCCTAACG GGGAAGACCA TCACCCTTGA GGTGGAGTCA AGTGACACCA TTGATAATGT CAAAACAAAG
ATTCAGGACA AAGAAGGAAT TCCCCCGGAC CAGCAGAGGT TGATCTTTGC GGGAAAACAG CTGGAGGATG GCCGTACTCT
CGCCGATTAC AACATCCAAA AAGAGTCAAC ATTGCATCTT GTTTTAAGGC TTCGTGGTGG TATTATTGAG CCATCTTTGA
TGGCATTGGC CAGAAAGTAT AACCAGGATA AGATGATCTG TCGCAAGTGT TACGCACGTT TACACCCTCG TGCTGTGAAC
TGCAGGAAAA AGAAGTGTGG ACACAGCAAC CAGTTGAGGC CAAAGAAGAA GATCAAGTAA ACTGTTCTCG TGTAAGATGC
AAACATGTTA TGGATTACTG GATATGGTGT AAACCTGACA ATTCCATTAG CTTCTTAGTA TCGTAGTTAC TCATTATTCT
TGTTTTCAGT TTGAGACTCG TTATGAATTA TTCTACAGTT CCTTCTAATG GTGATACAAT TTTGTTTTTG ACAATAATGC
GTTTGAAGTG GATGTTTCCC TGACAATTTT TTTATTACTT AATTCCTTTT ATTTCCATTA TAAGTTGTGG AAGGTCAGGC
CCGTAATTTC G

>Vigan.02G164100.01
ATGCAGATCT TCGTGAAAAC CCTAACGGGG AAGACCATCA CCCTTGAGGT GGAGTCAAGT GACACCATTG ATAATGTCAA
AACAAAGATT CAGGACAAAG AAGGAATTCC CCCGGACCAG CAGAGGTTGA TCTTTGCGGG AAAACAGCTG GAGGATGGCC
GTACTCTCGC CGATTACAAC ATCCAAAAAG AGTCAACATT GCATCTTGTT TTAAGGCTTC GTGGTGGTAT TATTGAGCCA
TCTTTGATGG CATTGGCCAG AAAGTATAAC CAGGATAAGA TGATCTGTCG CAAGTGTTAC GCACGTTTAC ACCCTCGTGC
TGTGAACTGC AGGAAAAAGA AGTGTGGACA CAGCAACCAG TTGAGGCCAA AGAAGAAGAT CAAGTAA

>Vigan.02G164100.01
MQIFVKTLTG KTITLEVESS DTIDNVKTKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP
SLMALARKYN QDKMICRKCY ARLHPRAVNC RKKKCGHSNQ LRPKKKIK*