GBrowse Details

Vigan.02G164100.01

Basic Information:
Name: Vigan.02G164100.01
Multiple alignment
Variant Information
Position: Chr02:16021997..16024674 (+ strand)
Length: 2678
Functional Information:
Description: Similar to uncharacterized protein. [A5AZI0, Vitis vinifera]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Ribosomal protein L40e (IPR001975)
Zinc-binding ribosomal protein (IPR011332)
Ubiquitin conserved site (IPR019954)
Ubiquitin (IPR019956)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:77.26,111.61,141.95,84.40,228.89,275.28,133.77,78.42
Automatic updates:
Name: NM_001250830 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306626 (LOC100306626), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:16021997..16022149 (+ strand)
Length: 153
Type: five_prime_UTR
Position: Chr02:16022150..16022252 (+ strand)
Length: 103
Type: CDS
Position: Chr02:16022341..16022427 (+ strand)
Length: 87
Type: CDS
Position: Chr02:16022784..16022886 (+ strand)
Length: 103
Type: CDS
Position: Chr02:16024220..16024286 (+ strand)
Length: 67
Type: CDS
Position: Chr02:16024377..16024403 (+ strand)
Length: 27
Type: CDS
Position: Chr02:16024404..16024674 (+ strand)
Length: 271
Type: three_prime_UTR


>Vigan.02G164100.01
AAAAAGAATA AAGAAATAGG TCTGGAATAA CATAATCCGG CTAACCAAAC ACACCCTAGG TTCTGAAAAC CCTACTACTC
TTAACGCTTC AATATAAATA TTACGTACAA CCAAGCGAGA AACCCTAATA GCAGTTTGGG AAGATAAGGA AAGATGCAGA
TCTTCGTGAA AACCCTAACG GGGAAGACCA TCACCCTTGA GGTGGAGTCA AGTGACACCA TTGATAATGT CAAAACAAAG
ATTCAGGACA AAGAAGGAAT TCCCCCGGAC CAGCAGAGGT TGATCTTTGC GGGAAAACAG CTGGAGGATG GCCGTACTCT
CGCCGATTAC AACATCCAAA AAGAGTCAAC ATTGCATCTT GTTTTAAGGC TTCGTGGTGG TATTATTGAG CCATCTTTGA
TGGCATTGGC CAGAAAGTAT AACCAGGATA AGATGATCTG TCGCAAGTGT TACGCACGTT TACACCCTCG TGCTGTGAAC
TGCAGGAAAA AGAAGTGTGG ACACAGCAAC CAGTTGAGGC CAAAGAAGAA GATCAAGTAA ACTGTTCTCG TGTAAGATGC
AAACATGTTA TGGATTACTG GATATGGTGT AAACCTGACA ATTCCATTAG CTTCTTAGTA TCGTAGTTAC TCATTATTCT
TGTTTTCAGT TTGAGACTCG TTATGAATTA TTCTACAGTT CCTTCTAATG GTGATACAAT TTTGTTTTTG ACAATAATGC
GTTTGAAGTG GATGTTTCCC TGACAATTTT TTTATTACTT AATTCCTTTT ATTTCCATTA TAAGTTGTGG AAGGTCAGGC
CCGTAATTTC G

>Vigan.02G164100.01
ATGCAGATCT TCGTGAAAAC CCTAACGGGG AAGACCATCA CCCTTGAGGT GGAGTCAAGT GACACCATTG ATAATGTCAA
AACAAAGATT CAGGACAAAG AAGGAATTCC CCCGGACCAG CAGAGGTTGA TCTTTGCGGG AAAACAGCTG GAGGATGGCC
GTACTCTCGC CGATTACAAC ATCCAAAAAG AGTCAACATT GCATCTTGTT TTAAGGCTTC GTGGTGGTAT TATTGAGCCA
TCTTTGATGG CATTGGCCAG AAAGTATAAC CAGGATAAGA TGATCTGTCG CAAGTGTTAC GCACGTTTAC ACCCTCGTGC
TGTGAACTGC AGGAAAAAGA AGTGTGGACA CAGCAACCAG TTGAGGCCAA AGAAGAAGAT CAAGTAA

>Vigan.02G164100.01
MQIFVKTLTG KTITLEVESS DTIDNVKTKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP
SLMALARKYN QDKMICRKCY ARLHPRAVNC RKKKCGHSNQ LRPKKKIK*