GBrowse Details

Vigan.02G170900.01

Basic Information:
Name: Vigan.02G170900.01
Multiple alignment
Variant Information
Position: Chr02:17109194..17114374 (+ strand)
Length: 5181
Functional Information:
Description: Similar to stomatin-like protein 2, mitochondrial-like. [XP_004502783.1, Cicer arietinum]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Band 7 protein (IPR001107)
Stomatin family (IPR001972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.13,24.13,16.42,14.14,37.57,20.34,13.72,13.04
Arabidopsis thaliana homolog: AT4G27585.1
Automatic updates:
Name: NM_001252947 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stomatin-like protein 2-like (LOC100809006), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255339 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stomatin-like protein 2-like (LOC100776545), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:17109194..17109379 (+ strand)
Length: 186
Type: five_prime_UTR
Position: Chr02:17109380..17109525 (+ strand)
Length: 146
Type: CDS
Position: Chr02:17109618..17109864 (+ strand)
Length: 247
Type: CDS
Position: Chr02:17110221..17110370 (+ strand)
Length: 150
Type: CDS
Position: Chr02:17111209..17111266 (+ strand)
Length: 58
Type: CDS
Position: Chr02:17111354..17111446 (+ strand)
Length: 93
Type: CDS
Position: Chr02:17111629..17111727 (+ strand)
Length: 99
Type: CDS
Position: Chr02:17112631..17112722 (+ strand)
Length: 92
Type: CDS
Position: Chr02:17113644..17113703 (+ strand)
Length: 60
Type: CDS
Position: Chr02:17113795..17114082 (+ strand)
Length: 288
Type: CDS
Position: Chr02:17114083..17114374 (+ strand)
Length: 292
Type: three_prime_UTR


>Vigan.02G170900.01
GAATTGTTAA TATATCGGAT CCAAAAAAGA ATTACCTGCT CATCACGAAA TTAATGTGTA AGATCTGACC ACACTAAAAA
AAATAGAAAG AAGAGGTTTT ACTAGGGTTT TATTACAAGC AAAGAGAAAG AATTAACAAG AGGAAGAAAA TTGAGGCTCA
AAAGAACTGA ACTCCGGAGT ACGAAAATGG CGACCATTTG GAAAACTAAC TCCGCGAGAA ACGCAGTGCG TTTTTTGAGC
CAATCGCTGG CTTCAACTAG CCGCACTCCT TCGATTCCCC CTCGTTTTTC CTCCGTTCGA TACCTCCGCA CTGGTCGCGA
TCCTAGTTCC AGGACCTATG ATATTATTCC GCCTGTGAAT TGGGGGATTC GGATTGTGCC GGAGAAGAAG GCGTTTGTGA
TTGAGCGATT CGGGAAGTAC GTTAAGACTC TTCCCTCTGG AATCCATTTT TTGATTCCTT TCGTGGATCG TATCGCTTAT
GTGCATTCGC TCAAGGAGGA GGCTATTAAC ATTCCTGACC AGAGTGCAAT TACCAAGGAC AATGTCACCA TCCTCATCGA
TGGCGTGCTT TACGTCAAGA TTGTGGATCC TAAGCTCGCG TCTTATGGAG TGGAGAATCC CATTTATGCT GTCATTCAGC
TGGCACAAAC GACAATGCGT AGTGAGCTTG GTAAGATTAC TCTTGACAAG ACCTTTGAAG AAAGAGACAC ACTCAATGAA
AAGATTGTGG AGGCCATTAA TGTGGCTGCA AAAAGTTGGG GTCTGGAGTG CCTTCGATAT GAAATAAGGG ATATCTCTCC
TCCACGTGGA GTGAGAGCAG CTATGGAGAT GCAAGCAGAA GCAGAAAGAA AAAAGAGAGC TCAAATTCTT GAGTCTGAAG
GAGAAAGACA GGCTCACATA AACATTGCTG ATGGAAAGAA GAGTTCAGTG ATCTTAGCAT CAGAAGCTGC AAGGATGGAT
CAAGTTAACA GAGCTCAAGG TGAGGCTGAA GCCATCCTAT CTAAAGCAAA AGCAACAGCT GAGGGATTAG CTCGTGTCTC
AACTGCCCTA AAAGAAAATG GAGGACCTGA GGCAGCAAGT TTAAGGATTG CAGAGCAATA TATTCAAGCT TTCAGTAACA
TAGCCAAGGA GGGCACAACA ATGTTGCTTC CTAGCTCTGC ATCCAATCCT GCTAACATGA TGGCCCAAGC GCTTACTATG
TATAAAAGTC TGCTTGGTAA CGTTTCGAAT GATAATAAGC AGAATGGAAA TATGCCCCTT TCAATATCAG GAAAATTAGA
AGTAAATGAT GCCTCGGGAG AGATTAAAGA CAAGAGCTCC ACAACTGCTA ATGAAAGTAA TGATATTCAA GATTATAGTG
AAAAATCTAG ATTTCCATTT CCGAGGCCAC CGAGATTTCC ATTTCCGAGC CCAGAATAGT TTTATTACTA TTTTCAAGAA
TTCATATTTT TTTTAGCGTA TGGATGTTAC AGTAAACTGA ATTCGGACTT TGGAGAGAAG AAAACAGAAA GTTTGAGTGG
ACTTTCTTTA ATTCACTTTT GTGTTTCTTT CTTGAGGAAA TAATGGCTTA TAATTTCGCA CCTGAGGAGT TATTTTTTGG
TTTCGTTCAG TCACTAAGAA ATATAAGCTT GTCTGCCATC CACACCAGAA TAAGGATCTT TTGTGTATAA TCCAGTTTCT
AGATTCATCG AGATATAGAA CAGCATATAA G

>Vigan.02G170900.01
ATGGCGACCA TTTGGAAAAC TAACTCCGCG AGAAACGCAG TGCGTTTTTT GAGCCAATCG CTGGCTTCAA CTAGCCGCAC
TCCTTCGATT CCCCCTCGTT TTTCCTCCGT TCGATACCTC CGCACTGGTC GCGATCCTAG TTCCAGGACC TATGATATTA
TTCCGCCTGT GAATTGGGGG ATTCGGATTG TGCCGGAGAA GAAGGCGTTT GTGATTGAGC GATTCGGGAA GTACGTTAAG
ACTCTTCCCT CTGGAATCCA TTTTTTGATT CCTTTCGTGG ATCGTATCGC TTATGTGCAT TCGCTCAAGG AGGAGGCTAT
TAACATTCCT GACCAGAGTG CAATTACCAA GGACAATGTC ACCATCCTCA TCGATGGCGT GCTTTACGTC AAGATTGTGG
ATCCTAAGCT CGCGTCTTAT GGAGTGGAGA ATCCCATTTA TGCTGTCATT CAGCTGGCAC AAACGACAAT GCGTAGTGAG
CTTGGTAAGA TTACTCTTGA CAAGACCTTT GAAGAAAGAG ACACACTCAA TGAAAAGATT GTGGAGGCCA TTAATGTGGC
TGCAAAAAGT TGGGGTCTGG AGTGCCTTCG ATATGAAATA AGGGATATCT CTCCTCCACG TGGAGTGAGA GCAGCTATGG
AGATGCAAGC AGAAGCAGAA AGAAAAAAGA GAGCTCAAAT TCTTGAGTCT GAAGGAGAAA GACAGGCTCA CATAAACATT
GCTGATGGAA AGAAGAGTTC AGTGATCTTA GCATCAGAAG CTGCAAGGAT GGATCAAGTT AACAGAGCTC AAGGTGAGGC
TGAAGCCATC CTATCTAAAG CAAAAGCAAC AGCTGAGGGA TTAGCTCGTG TCTCAACTGC CCTAAAAGAA AATGGAGGAC
CTGAGGCAGC AAGTTTAAGG ATTGCAGAGC AATATATTCA AGCTTTCAGT AACATAGCCA AGGAGGGCAC AACAATGTTG
CTTCCTAGCT CTGCATCCAA TCCTGCTAAC ATGATGGCCC AAGCGCTTAC TATGTATAAA AGTCTGCTTG GTAACGTTTC
GAATGATAAT AAGCAGAATG GAAATATGCC CCTTTCAATA TCAGGAAAAT TAGAAGTAAA TGATGCCTCG GGAGAGATTA
AAGACAAGAG CTCCACAACT GCTAATGAAA GTAATGATAT TCAAGATTAT AGTGAAAAAT CTAGATTTCC ATTTCCGAGG
CCACCGAGAT TTCCATTTCC GAGCCCAGAA TAG

>Vigan.02G170900.01
MATIWKTNSA RNAVRFLSQS LASTSRTPSI PPRFSSVRYL RTGRDPSSRT YDIIPPVNWG IRIVPEKKAF VIERFGKYVK
TLPSGIHFLI PFVDRIAYVH SLKEEAINIP DQSAITKDNV TILIDGVLYV KIVDPKLASY GVENPIYAVI QLAQTTMRSE
LGKITLDKTF EERDTLNEKI VEAINVAAKS WGLECLRYEI RDISPPRGVR AAMEMQAEAE RKKRAQILES EGERQAHINI
ADGKKSSVIL ASEAARMDQV NRAQGEAEAI LSKAKATAEG LARVSTALKE NGGPEAASLR IAEQYIQAFS NIAKEGTTML
LPSSASNPAN MMAQALTMYK SLLGNVSNDN KQNGNMPLSI SGKLEVNDAS GEIKDKSSTT ANESNDIQDY SEKSRFPFPR
PPRFPFPSPE *