VIGGS:GBrowse

Vigan.02G177700.01

Basic Information:

Name:	Vigan.02G177700.01 Multiple alignment Variant Information
Position:	Chr02:18419378..18422230 (+ strand)
Length:	2853

Functional Information:

Description:	Similar to Uncharacterized protein. [B0LUS3, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	DNA-binding WRKY (IPR003657)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.00,3.61,13.06,0.49,4.61,9.07,4.42
Arabidopsis thaliana homolog:	AT3G56400.1

Automatic updates:

Name:	OQ923542 NCBI(nuccore)
Organism:	Vigna angularis
Description:	Vigna angularis WRKY transcription factor 70 (WRKY70) mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:18419378..18419657 (+ strand)
Length:	280
Type:	five_prime_UTR

Position:	Chr02:18419658..18419986 (+ strand)
Length:	329
Type:	CDS

Position:	Chr02:18420693..18420794 (+ strand)
Length:	102
Type:	CDS

Position:	Chr02:18421224..18421650 (+ strand)
Length:	427
Type:	CDS

Position:	Chr02:18421651..18422230 (+ strand)
Length:	580
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G177700.01
AAAAAAGAAA GAAAATTATG CAGCGTCAGG CTTGCATCAG AAGAGCAACG TCATGTTTAG GTTTGTAAGC AAAGTTATTA
TCTGTGGACA AATTTTCTCT TCCATGATTG TTCAACATCA TCCCTCCCTT CTCAACGTTT TCCATTCACT GCTATCTCTC
TTTCCTCGCA AAAACCCACC TCTTTCTTCC TTCTCTCCAT ACCCACTATT CCCCTAATCT TCAATTTCTT CTAAAGTATA
TATCAATACA TCCTTAGCCA CCAACTACAC ACCCAGTACC ATGAACAACA CCCTCATCAC AGAGCTTCTT CTCGGTCTCG
ACTATGCCAC TCAGCTCAAG TTTCTGCTTC AGAAACCTGT TGACCCAGAT GCCTCTGCTG CAGCTAAGGA ACTGCTCACC
AATGTGCACA GATCTTTCGC TCAAACTCTC TCTATCTTGA CTTCTTCCCA CCCTGCAATG CCTCAAGACC AGGTTGCTCA
GAATCTCCTC ATTTCTGGGG AAGATGCCTC GCAGGCTGCA AGCATTGATC CCAGGTCTGA CGATTCAACT GAGAGTAGAA
AGAGATCGTT TCCCCTCTCA AAGGATCGCA GAGGTTCCTA CAAAAGAAGG AAGACTGAAC AGACATGGGC TATAGTTTCC
CAAACTACTG AAGATAATCA TGCGTGGAGA AAGTACGGAC AAAAGGATAT TCTAAATTCT CAGTTTCCCA GGAGTTACTT
CAGATGCACT AGGAAGTTTG AACAAGGTTG CAAGGCCACC AAACAAGTGC AACGGTTAGA AGAGAATCCT GATATGTACA
ATATTACGTA CATTGGGTTT CACACATGCA AAGACACCCT CAAGGCTCCA CAAATGGTCA CATGTTCTGA AACTTGGGAC
TCATTCCTTG AGAATTCCCA CGAAGATTTA AATGTTCCAA ATGAACAAAA GCAACTCGAT CCTCCTGTGA GATCACAAAG
CCCAATTGTT AAACAAGAAT CTCTCAGTGA TGAGACTGAT CCCAGTGATC TTACAGATGC CATGTGGTCT GAGTTGAAGG
ATTTAGAACT GTCCAATGAC AAGCCTGACT TGAAAATATC ATCTGAAAAT ACAGATGCAT TCATGTACTT GCTCTCGGAG
TTTGGACATG AATTTTGATG CGTTTTCTCA TCATTAGCTT CCCCTTTGGT GAAAGCCAAT TGCTTTAGTT ACCTTGTGGA
ATCTTAACCA TGCATTGATC AGATTGAATA TTTTAGATTT TGCATTTTCC TAGTTTATGT ACCATGGAGA GAATAACTTT
AGATCATTCT CACATCTCAT CAAATGTAAT GTATGTGTTT CTCAAAGGTT TCTCTAACTT ACCAAAATAT GAGATTGAAC
AGTTCCATCT AAAATGATTG GTGCTTTATA TATGTAAACT TATCATTTTG AAACAAATAA GAATAATACC AATCATTTTG
AATGGAGTTA TTTAATTCTC TTTCTATTTT TGTGTAAGGT AGATTTGTCC ATTTCTAGAA TGTGCTTTAA AAATGGACGG
AATCAACTGT GGATGCTACA CTCTTTTGCA GTTCTTTCTA TCTTCTTAGG AAGTGCTATG CATGCATGAG CCTTTGAACT
CTGTGATGAA CATATATAAA TTGTAATGGG TTACTTCGGT TCCAGCCAAG TAAACATGTG TATAGGACAT ATAGGGGAGC
ATTTTTTTTT TTTTTTGATG AACTTTTTTG CTACAGGG

[show][hide][copy]CDS

>Vigan.02G177700.01
ATGAACAACA CCCTCATCAC AGAGCTTCTT CTCGGTCTCG ACTATGCCAC TCAGCTCAAG TTTCTGCTTC AGAAACCTGT
TGACCCAGAT GCCTCTGCTG CAGCTAAGGA ACTGCTCACC AATGTGCACA GATCTTTCGC TCAAACTCTC TCTATCTTGA
CTTCTTCCCA CCCTGCAATG CCTCAAGACC AGGTTGCTCA GAATCTCCTC ATTTCTGGGG AAGATGCCTC GCAGGCTGCA
AGCATTGATC CCAGGTCTGA CGATTCAACT GAGAGTAGAA AGAGATCGTT TCCCCTCTCA AAGGATCGCA GAGGTTCCTA
CAAAAGAAGG AAGACTGAAC AGACATGGGC TATAGTTTCC CAAACTACTG AAGATAATCA TGCGTGGAGA AAGTACGGAC
AAAAGGATAT TCTAAATTCT CAGTTTCCCA GGAGTTACTT CAGATGCACT AGGAAGTTTG AACAAGGTTG CAAGGCCACC
AAACAAGTGC AACGGTTAGA AGAGAATCCT GATATGTACA ATATTACGTA CATTGGGTTT CACACATGCA AAGACACCCT
CAAGGCTCCA CAAATGGTCA CATGTTCTGA AACTTGGGAC TCATTCCTTG AGAATTCCCA CGAAGATTTA AATGTTCCAA
ATGAACAAAA GCAACTCGAT CCTCCTGTGA GATCACAAAG CCCAATTGTT AAACAAGAAT CTCTCAGTGA TGAGACTGAT
CCCAGTGATC TTACAGATGC CATGTGGTCT GAGTTGAAGG ATTTAGAACT GTCCAATGAC AAGCCTGACT TGAAAATATC
ATCTGAAAAT ACAGATGCAT TCATGTACTT GCTCTCGGAG TTTGGACATG AATTTTGA

[show][hide][copy]PROTEIN

>Vigan.02G177700.01
MNNTLITELL LGLDYATQLK FLLQKPVDPD ASAAAKELLT NVHRSFAQTL SILTSSHPAM PQDQVAQNLL ISGEDASQAA
SIDPRSDDST ESRKRSFPLS KDRRGSYKRR KTEQTWAIVS QTTEDNHAWR KYGQKDILNS QFPRSYFRCT RKFEQGCKAT
KQVQRLEENP DMYNITYIGF HTCKDTLKAP QMVTCSETWD SFLENSHEDL NVPNEQKQLD PPVRSQSPIV KQESLSDETD
PSDLTDAMWS ELKDLELSND KPDLKISSEN TDAFMYLLSE FGHEF*