GBrowse Details

Vigan.02G180700.01

Basic Information:
Name: Vigan.02G180700.01
Multiple alignment
Variant Information
Position: Chr02:18997802..18999501 (+ strand)
Length: 1700
Functional Information:
Description: Similar to Expansin. [Q84L80, Pyrus communis]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.42,7.79,138.68,162.11,281.03,984.66,441.66,72.40
Automatic updates:
Name: NM_001253184 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin (DD2/63), mRNA.
PubMed ID: 11117264 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:18997802..18997851 (+ strand)
Length: 50
Type: five_prime_UTR
Position: Chr02:18997852..18997996 (+ strand)
Length: 145
Type: CDS
Position: Chr02:18998268..18998580 (+ strand)
Length: 313
Type: CDS
Position: Chr02:18998855..18999158 (+ strand)
Length: 304
Type: CDS
Position: Chr02:18999159..18999501 (+ strand)
Length: 343
Type: three_prime_UTR


>Vigan.02G180700.01
TAAGCAGCAA TAAGAAAACT TCTCCTATCT TAAATCCTCT GTACCGCACA ATGGCCATTG CAGCAACCTC TACCATCTCT
CTTCTTTTCT TTCTTCTTAA TCTATTCCTC CAAGGCACTT TTGGCGACTA TGGAGGTGGA TGGCAAGGTG GTCATGCCAC
ATTCTACGGT GGAGGAGATG CCTCAGGCAC AATGGGAGGG GCTTGTGGTT ATGGAAATTT GTACAGCCAA GGATATGGTA
CTAACACTGC AGCACTCAGC ACTGCTCTAT TCAACAATGG CTTGAGTTGT GGGTCTTGCT ATGAGATGAA ATGTGACAGT
GACCCCAGAT GGTGCCTCCC CGGTAGCATA ATAGTCACTG CCACAAACTT CTGCCCCCCT AACTTTGCGT TGGCTAATAA
CAATGGTGGC TGGTGCAACC CTCCTTTGCA GCACTTCGAT CTTGCTGAGC CTGCTTTCTT ACAAATTGCT CAATACAAAG
CTGGAATTGT CCCTGTTTCC TTCAGAAGAG TATCCTGTGT GAAGAAAGGA GGAATCAGAT TCACCATCAA TGGTCACTCA
TACTTCAACT TGGTTCTGAT CACAAATGTT GGTGGAGCTG GTGATGTTCA TTCTGTGTCC ATAAAGGGGT CTAAGACTGG
TTGGCAAACC ATGTCTAGAA ACTGGGGGCA GAATTGGCAA AGCAACTCTT ACCTGAATGG TCAAAGCCTC TCTTTTCAGG
TGACTGCAAG TGATGGTAGA ACTCTCACCA GCAACAACAT TGTGCCTGCT AACTGGCAAT TTGGTCAAAC ATTTGAAGGG
CAGCAGTTTT AGGAACCTTA AAAAGTTCAA AATTTGTGTG TAATATATGA TGCCATTTTT CATTGTTGGT TTGGTTTGTT
ATAGTTGGAA AGGGTGAGGA AGAGAAAACG GAAAAGGTAG ATTAGGAGGA GTTGTGGCCA ACATGGCCCC TAATGCTGTG
GTGGCTATAT GGCACCCGCT AGGACTAATA TAATATAAAG TCTTCTATTT TCAGAGACAT CTTATTGATG AACACCTTTT
GATGAAGCAA AAGGTGGTTA TGATCTCAAT TACTTTGTAT ATCTGATCCC CACTATGGTA GAAAACCAAT CTGGGGCCAA
TTAATATCAA TTTGATCATG CTTTTTTGTT GCAAG

>Vigan.02G180700.01
ATGGCCATTG CAGCAACCTC TACCATCTCT CTTCTTTTCT TTCTTCTTAA TCTATTCCTC CAAGGCACTT TTGGCGACTA
TGGAGGTGGA TGGCAAGGTG GTCATGCCAC ATTCTACGGT GGAGGAGATG CCTCAGGCAC AATGGGAGGG GCTTGTGGTT
ATGGAAATTT GTACAGCCAA GGATATGGTA CTAACACTGC AGCACTCAGC ACTGCTCTAT TCAACAATGG CTTGAGTTGT
GGGTCTTGCT ATGAGATGAA ATGTGACAGT GACCCCAGAT GGTGCCTCCC CGGTAGCATA ATAGTCACTG CCACAAACTT
CTGCCCCCCT AACTTTGCGT TGGCTAATAA CAATGGTGGC TGGTGCAACC CTCCTTTGCA GCACTTCGAT CTTGCTGAGC
CTGCTTTCTT ACAAATTGCT CAATACAAAG CTGGAATTGT CCCTGTTTCC TTCAGAAGAG TATCCTGTGT GAAGAAAGGA
GGAATCAGAT TCACCATCAA TGGTCACTCA TACTTCAACT TGGTTCTGAT CACAAATGTT GGTGGAGCTG GTGATGTTCA
TTCTGTGTCC ATAAAGGGGT CTAAGACTGG TTGGCAAACC ATGTCTAGAA ACTGGGGGCA GAATTGGCAA AGCAACTCTT
ACCTGAATGG TCAAAGCCTC TCTTTTCAGG TGACTGCAAG TGATGGTAGA ACTCTCACCA GCAACAACAT TGTGCCTGCT
AACTGGCAAT TTGGTCAAAC ATTTGAAGGG CAGCAGTTTT AG

>Vigan.02G180700.01
MAIAATSTIS LLFFLLNLFL QGTFGDYGGG WQGGHATFYG GGDASGTMGG ACGYGNLYSQ GYGTNTAALS TALFNNGLSC
GSCYEMKCDS DPRWCLPGSI IVTATNFCPP NFALANNNGG WCNPPLQHFD LAEPAFLQIA QYKAGIVPVS FRRVSCVKKG
GIRFTINGHS YFNLVLITNV GGAGDVHSVS IKGSKTGWQT MSRNWGQNWQ SNSYLNGQSL SFQVTASDGR TLTSNNIVPA
NWQFGQTFEG QQF*