GBrowse Details

Vigan.02G187900.01

Basic Information:
Name: Vigan.02G187900.01
Multiple alignment
Variant Information
Position: Chr02:21479973..21501573 (- strand)
Length: 21601
Functional Information:
Description: Similar to uncharacterized LOC101210357. [XP_004160483.1, Cucumis sativus]
InterPro: Protein of unknown function DUF502 (IPR007462)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.08,3.87,11.82,7.79,14.27,5.36,8.69,10.18
Arabidopsis thaliana homolog: AT1G43130.1
Automatic updates:
Name: NM_001253339 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100792693 (LOC100792693), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:21479973..21480418 (- strand)
Length: 446
Type: three_prime_UTR
Position: Chr02:21480419..21480519 (- strand)
Length: 101
Type: CDS
Position: Chr02:21480798..21480924 (- strand)
Length: 127
Type: CDS
Position: Chr02:21494089..21494186 (- strand)
Length: 98
Type: CDS
Position: Chr02:21498994..21499161 (- strand)
Length: 168
Type: CDS
Position: Chr02:21499656..21499765 (- strand)
Length: 110
Type: CDS
Position: Chr02:21499859..21499911 (- strand)
Length: 53
Type: CDS
Position: Chr02:21500915..21501034 (- strand)
Length: 120
Type: CDS
Position: Chr02:21501035..21501573 (- strand)
Length: 539
Type: five_prime_UTR


>Vigan.02G187900.01
GTGTGAATTA TACTCTCTCC ATCCTCGCTT TCTTTTGCAT TTATTTTCTA CACCGAAACT CGACAACGCA ACCATCCAAA
CACGCCTCCT TAGTTGGGAA ATTTCTACTA CTAAAATATG CGATACAAAA CAAAATGTCT GTAGATCAAT GTTCCAGTGT
GCGAGAATGT CACTAGAAGT TCCGGATCGG AAGAGGGTGA TGGATGCGTT GAATGTGAAA AATGTATTTT AGTTTTAAGA
AAAACCTAAT TATTGCCTAA TTAATTTCTT AAGAGAAGGG ACACGTCCTC GAAAGCCACG TCATCTTAAC ACCGAATTTC
TTTCAGTCTG GTAGGTAATG AGACTTTTCA ATTATCCGGT GAAGGGAAGG GAAGAAAAGA GGAAGTGAGT GTTGCTTGCG
TAGTATCCAA GACAAGGAAC ACAATAATAA TTCGCCAAGC CATTTCAATT ATCTTTAATT CCGTTTTATT TTATCTCCCG
ATTTTTATAA TTATTGTTAT CATTGGCGTT ACAATCTGAA AGTGTGAAGA GCGACGAAGA TGGCGGAAGA AAAAGAATCA
ACATCAATTC CTCTCAGTCA AGGGGATAAT GCATCTCGCG ATGATCCCGA AGACCCAGCC AAGTCTCCAC CAAGCTCCCC
CAACTCCTCC ACTCGCAGGG CTTGCTGCTT TGTTCTCCAG AGTTGGGTCT CAAAGAAATT TATGACTGGA TGTGTAGTTC
TTTTTCCAGT TGCTGTTACC TTCTTTGTTA CATGGTGGTT TATTCAGTTT GTTGATGGTT TTTTTAGTCC ATTATACTCC
AGGCTTGGCA TTAATATATT TGGACTTGGT TTCATTACAT CATTAGCTTT TGTATTTCTT ATTGGTGTTT TTGTTTCATC
ATGGATGGGA GCTACTGTTT TCTGGATTGG AGAATGGTTC ATAAAGCGAA TGCCCCTTGT TAGGCATATA TACTCTGCAT
CCAAGCAGAT TAGCGCTGCA ATATCTCCAG ATCAAAATAC CACTGCCTTT AAAGAGGTAG CCATTATCCG TCATCCACGT
GTTGGGGAAT ATGCCTTTGG CTTTATTACA TCAACTGTTA CTCTACAGAA AGATAATGAA GATGAAGAGC TTTGTAGCGT
TTTTGTCCCT ACGAACCATC TGTATATTGG CGATATATTT CTGGTTAACT CCAAAGATAT TATAAGACCA AATCTTTCTA
TTCGAGAAGG CATAGAAATC ATTGTTTCCG GGGGAATGAC TATGCCGCAG TTGATAACTC CGGTTGAAAG GGCTACTCGA
CCGAATGAAA GAATATCTTT AAATAGAATT GGATAAAGGA TTAAATCCGT GGTTGGAACC ATGTGGGTGA TGGAAATTAT
CAGTCTGAAC CTCCATTTAT TTTAATATAC GAAATTTGTT GTTTAATATT TTGTTAACTA TTGTCTGTTC CAAGCTGCAA
GATAACTTGT AGAACTGTAG TTGTAAGCTT GTAATCTCCT CCCTGTTTTT GCTCTACCAG TTATACCCCA ACTCCAGGCT
GACACATATT AACTCCAAAG TATTAATATA TGTTCGAAAG TCTGCGTGTT CTTAACATTA GATAGGATCT GTCTATGGAA
ATTTTATACC TGCTACTTTT ATATTTCTGT GTGTCTGAAA AGCCACGCGA AGTGTTATTA TTATTCACTT TACCAAGAGA
CATGTTTTAA ATATAACAAA AACAGACCGT TAATTCATGA TGAAATTAAA AATATTATTG TATAGAATAT ATTTTATTGA
TT

>Vigan.02G187900.01
ATGGCGGAAG AAAAAGAATC AACATCAATT CCTCTCAGTC AAGGGGATAA TGCATCTCGC GATGATCCCG AAGACCCAGC
CAAGTCTCCA CCAAGCTCCC CCAACTCCTC CACTCGCAGG GCTTGCTGCT TTGTTCTCCA GAGTTGGGTC TCAAAGAAAT
TTATGACTGG ATGTGTAGTT CTTTTTCCAG TTGCTGTTAC CTTCTTTGTT ACATGGTGGT TTATTCAGTT TGTTGATGGT
TTTTTTAGTC CATTATACTC CAGGCTTGGC ATTAATATAT TTGGACTTGG TTTCATTACA TCATTAGCTT TTGTATTTCT
TATTGGTGTT TTTGTTTCAT CATGGATGGG AGCTACTGTT TTCTGGATTG GAGAATGGTT CATAAAGCGA ATGCCCCTTG
TTAGGCATAT ATACTCTGCA TCCAAGCAGA TTAGCGCTGC AATATCTCCA GATCAAAATA CCACTGCCTT TAAAGAGGTA
GCCATTATCC GTCATCCACG TGTTGGGGAA TATGCCTTTG GCTTTATTAC ATCAACTGTT ACTCTACAGA AAGATAATGA
AGATGAAGAG CTTTGTAGCG TTTTTGTCCC TACGAACCAT CTGTATATTG GCGATATATT TCTGGTTAAC TCCAAAGATA
TTATAAGACC AAATCTTTCT ATTCGAGAAG GCATAGAAAT CATTGTTTCC GGGGGAATGA CTATGCCGCA GTTGATAACT
CCGGTTGAAA GGGCTACTCG ACCGAATGAA AGAATATCTT TAAATAGAAT TGGATAA

>Vigan.02G187900.01
MAEEKESTSI PLSQGDNASR DDPEDPAKSP PSSPNSSTRR ACCFVLQSWV SKKFMTGCVV LFPVAVTFFV TWWFIQFVDG
FFSPLYSRLG INIFGLGFIT SLAFVFLIGV FVSSWMGATV FWIGEWFIKR MPLVRHIYSA SKQISAAISP DQNTTAFKEV
AIIRHPRVGE YAFGFITSTV TLQKDNEDEE LCSVFVPTNH LYIGDIFLVN SKDIIRPNLS IREGIEIIVS GGMTMPQLIT
PVERATRPNE RISLNRIG*