GBrowse Details

Vigan.02G196200.01

Basic Information:
Name: Vigan.02G196200.01
Multiple alignment
Variant Information
Position: Chr02:25150505..25155173 (+ strand)
Length: 4669
Functional Information:
Description: Similar to Superoxide dismutase. [V7AZE6, Phaseolus vulgaris]
GO: Biological Process: superoxide metabolic process (GO:0006801)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: superoxide dismutase activity (GO:0004784)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Manganese/iron superoxide dismutase (IPR001189)
Manganese/iron superoxide dismutase, N-terminal (IPR019831)
Manganese/iron superoxide dismutase, C-terminal (IPR019832)
Manganese/iron superoxide dismutase, binding site (IPR019833)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:201.92,234.81,114.75,86.13,125.16,152.48,216.13,80.72
Arabidopsis thaliana homolog: AT3G10920.1
Automatic updates:
Name: BT092642 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11M24 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248137 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MnSOD (LOC100101896), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:25150505..25150660 (+ strand)
Length: 156
Type: five_prime_UTR
Position: Chr02:25150661..25150979 (+ strand)
Length: 319
Type: CDS
Position: Chr02:25151638..25151684 (+ strand)
Length: 47
Type: CDS
Position: Chr02:25151769..25151894 (+ strand)
Length: 126
Type: CDS
Position: Chr02:25152006..25152062 (+ strand)
Length: 57
Type: CDS
Position: Chr02:25153169..25153246 (+ strand)
Length: 78
Type: CDS
Position: Chr02:25154736..25154828 (+ strand)
Length: 93
Type: CDS
Position: Chr02:25154829..25155173 (+ strand)
Length: 345
Type: three_prime_UTR


>Vigan.02G196200.01
ATAAATTAAT CATATAATAT GTATTAAATA CGGGAACATA TGTATTACTA GCATTTTATT TTGTGACAAA ATATTTGATT
TATAATTCCA TCCACTCTGC TGTCACCGAA TCTCCTTCAT TTAGGTGTGT CGCAGAAGGT CTCCATATCT TTCCCGATGG
CTGCGCGAGC CCTATTGACC AGAAAAACCC TAGCATCGGT GCTCCGCAAT GACGCGAGGC CTCTCGGAGT AGGCGCAGCG
GTGGCTACTC ATTCCCGCGG TTTGCATGTT TACACGCTAC CTGATCTGGA CTACGACTAT GGCGCACTGG AGCCAGCCAT
CAGCGGTGAA ATCATGCAGC TCCACCACCA GAAGCACCAT CAGACTTACA TCACCAACTA CAACAAGGCT CTTGAGCAGC
TCCAAGATGC CGTTGCCAAG GCCGATTCCT CTGCCGTCGT TAAGCTCCAG GCCGCCATCA AGTTCAACGG CGGAGGTCAT
ATCAACCATT CTATTTTCTG GAAAAATCTA GCTCCTGTTC GTGAAGGAGG TGGTGAACCA CCGAAGGGTC CACTGGGATG
GGCTATTGAC ACGCATTTTG GCTCTTTTGA AGCATTGATA CAAAAAGTTA ATGCAGAAGG TGCAGCACTG CAGGGGTCTG
GTTGGGTGTG GCTTGGTCTG GACAAAGAGT TGAAGAGGCT TGTAGTTGAA ACCACTGCCA ACCAGGACCC ACTGGTTACC
AAGGGACCAA ATTTGGTTCC GTTGCTTGGC ATTGATGTTT GGGAGCATGC GTACTACTTA CAGTACAAGA ATGTTAGACC
AGATTATCTG AAGAACATTT GGAAAGTTAT TAATTGGAAA TATGCTAATG ATGTGTATGA GAAAGAGAGC TCTTAGTCTG
AAAGTGCTGA ATTATATGGT ACCTGAGATG ACAGATTTCC AGCAAGGTGA GAAAAGTGGA ATAAAATGAT GTAATGTAGA
AGATAACACT AACTATTTAT ACAGTTGTGA CAAAGAACCT CGAGCTTTTA TGGCTGCATT GCTCATGTCT TATGGATTTT
CTGATGCTCT GTTAAGGTGA TATTTGTGTC CGTCGATGTA TATTTTTTGC TTCTTGGGTG TGATCCTTTT TGTCGAATAA
GTAGTATAAT TATGAAATCC AAGCCCCGTA TTATTTGTTG GGTGAACAAG TGGGAGTTAT TTAGTTGCGA TTATTCATTA
GAAAATTAAA TTTAAAAGAA A

>Vigan.02G196200.01
ATGGCTGCGC GAGCCCTATT GACCAGAAAA ACCCTAGCAT CGGTGCTCCG CAATGACGCG AGGCCTCTCG GAGTAGGCGC
AGCGGTGGCT ACTCATTCCC GCGGTTTGCA TGTTTACACG CTACCTGATC TGGACTACGA CTATGGCGCA CTGGAGCCAG
CCATCAGCGG TGAAATCATG CAGCTCCACC ACCAGAAGCA CCATCAGACT TACATCACCA ACTACAACAA GGCTCTTGAG
CAGCTCCAAG ATGCCGTTGC CAAGGCCGAT TCCTCTGCCG TCGTTAAGCT CCAGGCCGCC ATCAAGTTCA ACGGCGGAGG
TCATATCAAC CATTCTATTT TCTGGAAAAA TCTAGCTCCT GTTCGTGAAG GAGGTGGTGA ACCACCGAAG GGTCCACTGG
GATGGGCTAT TGACACGCAT TTTGGCTCTT TTGAAGCATT GATACAAAAA GTTAATGCAG AAGGTGCAGC ACTGCAGGGG
TCTGGTTGGG TGTGGCTTGG TCTGGACAAA GAGTTGAAGA GGCTTGTAGT TGAAACCACT GCCAACCAGG ACCCACTGGT
TACCAAGGGA CCAAATTTGG TTCCGTTGCT TGGCATTGAT GTTTGGGAGC ATGCGTACTA CTTACAGTAC AAGAATGTTA
GACCAGATTA TCTGAAGAAC ATTTGGAAAG TTATTAATTG GAAATATGCT AATGATGTGT ATGAGAAAGA GAGCTCTTAG


>Vigan.02G196200.01
MAARALLTRK TLASVLRNDA RPLGVGAAVA THSRGLHVYT LPDLDYDYGA LEPAISGEIM QLHHQKHHQT YITNYNKALE
QLQDAVAKAD SSAVVKLQAA IKFNGGGHIN HSIFWKNLAP VREGGGEPPK GPLGWAIDTH FGSFEALIQK VNAEGAALQG
SGWVWLGLDK ELKRLVVETT ANQDPLVTKG PNLVPLLGID VWEHAYYLQY KNVRPDYLKN IWKVINWKYA NDVYEKESS*