GBrowse Details

Vigan.02G201300.01

Basic Information:
Name: Vigan.02G201300.01
Multiple alignment
Variant Information
Position: Chr02:26579156..26592219 (- strand)
Length: 13064
Functional Information:
Description: Similar to DNA polymerase. [V7AVV5, Phaseolus vulgaris]
GO: Biological Process: nucleobase-containing compound metabolic process (GO:0006139)
Biological Process: DNA replication (GO:0006260)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed DNA polymerase activity (GO:0003887)
InterPro: DNA-directed DNA polymerase, family B, pol2 (IPR004578)
DNA-directed DNA polymerase, family B, exonuclease domain (IPR006133)
DNA-directed DNA polymerase, family B, multifunctional domain (IPR006134)
DNA-directed DNA polymerase, family B (IPR006172)
Ribonuclease H-like domain (IPR012337)
DNA-directed DNA polymerase, family B, conserved site (IPR017964)
DNA polymerase, palm domain (IPR023211)
C4-type zinc-finger of DNA polymerase delta (IPR025687)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.77,1.98,2.93,1.93,4.41,2.22,4.01,1.88
Arabidopsis thaliana homolog: AT5G63960.2
Structure :
Position: Chr02:26579156..26579434 (- strand)
Length: 279
Type: three_prime_UTR
Position: Chr02:26579435..26579522 (- strand)
Length: 88
Type: CDS
Position: Chr02:26579829..26579916 (- strand)
Length: 88
Type: CDS
Position: Chr02:26580030..26580103 (- strand)
Length: 74
Type: CDS
Position: Chr02:26580837..26580997 (- strand)
Length: 161
Type: CDS
Position: Chr02:26581071..26581160 (- strand)
Length: 90
Type: CDS
Position: Chr02:26581246..26581320 (- strand)
Length: 75
Type: CDS
Position: Chr02:26581882..26581953 (- strand)
Length: 72
Type: CDS
Position: Chr02:26582094..26582266 (- strand)
Length: 173
Type: CDS
Position: Chr02:26582336..26582450 (- strand)
Length: 115
Type: CDS
Position: Chr02:26582989..26583102 (- strand)
Length: 114
Type: CDS
Position: Chr02:26583573..26583652 (- strand)
Length: 80
Type: CDS
Position: Chr02:26583765..26583852 (- strand)
Length: 88
Type: CDS
Position: Chr02:26584012..26584068 (- strand)
Length: 57
Type: CDS
Position: Chr02:26584215..26584280 (- strand)
Length: 66
Type: CDS
Position: Chr02:26584401..26584496 (- strand)
Length: 96
Type: CDS
Position: Chr02:26584645..26584752 (- strand)
Length: 108
Type: CDS
Position: Chr02:26586425..26586523 (- strand)
Length: 99
Type: CDS
Position: Chr02:26586630..26586749 (- strand)
Length: 120
Type: CDS
Position: Chr02:26587415..26587501 (- strand)
Length: 87
Type: CDS
Position: Chr02:26588141..26588212 (- strand)
Length: 72
Type: CDS
Position: Chr02:26588303..26588369 (- strand)
Length: 67
Type: CDS
Position: Chr02:26588734..26588825 (- strand)
Length: 92
Type: CDS
Position: Chr02:26588958..26589035 (- strand)
Length: 78
Type: CDS
Position: Chr02:26589319..26589456 (- strand)
Length: 138
Type: CDS
Position: Chr02:26589538..26589673 (- strand)
Length: 136
Type: CDS
Position: Chr02:26589768..26589963 (- strand)
Length: 196
Type: CDS
Position: Chr02:26590185..26590344 (- strand)
Length: 160
Type: CDS
Position: Chr02:26590442..26590548 (- strand)
Length: 107
Type: CDS
Position: Chr02:26591628..26591738 (- strand)
Length: 111
Type: CDS
Position: Chr02:26591848..26592100 (- strand)
Length: 253
Type: CDS
Position: Chr02:26592101..26592219 (- strand)
Length: 119
Type: five_prime_UTR


>Vigan.02G201300.01
CACGTGCTCG CAAGCGGGAA AATCTCACAA ACAACTCTTA ACAAAAACTG GCGGGAACTC GTTAGCCTTT CACACCACAT
TCTCCCACTT CTCTACCGGC TCTCTCTCTT CCGGTTCCAA TGAGCAACGC TTCACGAAAG CGCGCGGCGT CGGCGGTGGC
GCCACAACCT CCGCCGCCAA AGCAAGTCTT AATGACTCAG GAAGAGGACT TCATGGACGA AGACGTGTTC ATCGACCAAA
CCCTTGTTTC AGAAGATGAA GAGTCCCTCA TTCTCCGCGA CATCGAGCAG CGCCACGCCC TCGCCGCGCG GCTATCCAAG
TGGACGCGTC CTCCTCTCTC TGATGATTAC GTCGCACAAT CTCGAGGCGT CGTTTTTCAG CAGTTGGAGA TTGATTATGT
GATCGGGGAG AGTCACAGGG AGTTGCTGCC GAACTTGTCT GGACCTGCTG CTATTATCAG AATTTTTGGT GTTACGAAAG
AAGGACACAG TGTTTGCTGC AATGTTCACG GCTTTGAACC ATATTTCTAC ATCTCTTGCC CTCCTGGAAT GGGTCCAGAT
GATATCTCTC ATTTTCACCA AGCACTTGAG GGAAGGATGA GAGAAGCCAA TAGAAATAGT AATGTAGGAA AATTCGTTCG
CCGCATTGAA ATGGTGCAGA GGAGAAGTAT TATGTACTAT CAGCAATCTG ATTCTCAGCC CTTTCTCAAA ATAGTAGTTG
CACTCCCAAC AATGGTTGCC AGCTGCCGTG GTATTCTTGA TAGGGGTATT CAGCTTGATG GTCTGGGAAT GAAGAGCTTC
TTGACTTATG AAAGCAATGT ACTTTTTGCT CTACGGTTCA TGATTGATTG CAACATAGTT GGTGGAAATT GGATTGAAAT
TCTGGCAGGA AAATATAAAA AGATAGTGAA AAGCTTGTCT TATTGCCAGT TGGAGTTTGA TTGCCTGTAT TCTGATTTGA
TTAGTCATGC TCCAGAAGGG GAGTATTCAA AGATGGCTCC ATTTCGCATA TTGAGTTTTG ACATTGAGTG TGCTGGTCGT
AAAGGTCACT TTCCCGAGCC TAGCCATGAT CCTGTTATCC AGATTGCTAA TTTGGTTACT TTACAAGGAG AAGACCAGCC
ACTTATTCGT AATGTGATGA CCCTTAAATC ATGTTCTCCT ATTGTTGGTG TTGATGTGAT GTCATTTGAT ACGGAAAGAG
AAGTCCTACT TGCTTGGAGG GATTTTCTTC GGGAAGTGGA CCCTGATATT ATTATTGGAT ATAATATCTG CAAATTTGAC
CTGCCATATC TCATTGAGAG AGCTGCAAAC CTGAAGATAG CAGAATTTCC AATTCTTGGC CGTATCAGGA ACAGTAGAGT
TCGGGTAAAG GATACAACTT TTTCATCAAG GCAGTATGGG ACCAGGGAAA GTAAAGAAGT TACAGTAGAA GGGAGAGTTC
AGTTTGACTT ACTCCAGGTT ATGCAAAGAG ACTACAAATT AAGTTCTTAT TCACTAAATT CTGTCTCAGC ACACTTCCTT
TCTGAGCAGA AAGAGGATGT CCATCATTCT ATTATATCTG ATCTTCAGAA TGGAACTGCA GAAACTAGGA GGCGCCTTGC
TGTGTATTGT TTGAAGGATG CATATCTTCC TCAGCGGCTT TTGGATAAAC TGATGTTCAT TTACAACTAT GTGGAGATGG
CTCGAGTAAC AGGTGTTCCA ATTTCTTTTC TACTTTCCAG AGGCCAAAGC ATTAAGGTAC TTTCTCAACT TCTTAGGAAG
GCAAGACAGA AGAATCTGGT CATTCCTAAT GTCAAGCAGG TTGGGTCTGA ACAAGGAACA TTTGAAGGTG CCACTGTATT
GGAGGCAAGA GCTGGATTTT ATGAAAAACC AATCGCTACG TTAGATTTTG CATCCCTGTA TCCATCTATT ATGATGGCCT
ATAATTTATG TTATTGCACT CTGGTCACTT CTGAAGATGC TCGCAAGCTC AACATCCCTT CAGAGTCCTT GAACAGAACT
CCATCTGGTG AAACATTTGT TAAATCAAAT CTGCAGAAGG GAATACTGCC TGAAATACTT GAAGAGCTAT TAACAGCCCG
TAAAAGGGCA AAAGCAGATT TAAAGGAGGC AAAGGATCCC CTGGAGAGGG CAGTGCTAGA TGGTAGGCAG CTGGCCCTGA
AAATTAGTGC AAATTCCGTC TATGGGTTTA CTGGGGCTAC CATTGGTCAG TTACCATGTT TAGAGATATC ATCGAGTGTA
ACAAGCTATG GTCGACAAAT GATTGAGCAC ACAAAAAAAC TTGTGGAAGA TAAATTCACG ACACTTAATG GCTATGAACA
CAATGCTGAG GTAATATATG GAGACACGGA TTCAGTCATG GTACAATTTG GTGTTTCTGC AGTAGAACAG GCCATGAACT
TGGGGCGAGA AGCTGCCGAA TATATAAGTG GAACTTTCAC AAAACCCATC AAGCTAGAAT TTGAGAAGGT TTATTATCCA
TATCTCTTGA TTAGCAAGAA GAGATATGCT GGTTTGTTTT GGACAAAACC AGACAAGTTC GACAAAATGG ACACTAAAGG
TATTGAAACA GTTCGAAGAG ACAATTGTTT GTTGGTCAAA AACCTGGTGA ATGATTGTCT TCACAAAATA CTGATTGACA
GAGACATTCC AGGGGCTGTC CAGTATGTCA AGAACGCAAT TTCAGATCTA CTCAGGAATC GTATGGATTT ATCACTGTTG
GTTATTACAA AGGGTTTAAC AAAGACAGGA GATGATTATG AAGTAAAGGC AGCTCATGTT GAACTTGCTG AAAGGATGCG
CAAGCGAGAT GCGGCCACTG CTCCAAATGT TGGAGACAGA GTACCTTATG TAATTATCAA AGGTGCAAAA GGTGCGAAGG
CATATGAGAA ATCAGAGGAC CCTATTTATG TTCTAGAGAA CAACATACCA ATAGATGCTC AATACTATCT TGAGAATCAA
ATTAGCAAGC CGATCCTCAG AATTTTTGAG CCAATTCTGA AGAATGCTAG CAGAGAACTT CTCCATGGAA GTCATACAAG
ATCTATTTCT ATTTCTACTC CGTCAAATAG TGGCTTATGG AAATTTGCTA AGAAAGAGCT TACCTGCATT GGCTGTAAAG
CTGTATTAGG GAAGGATCAT CACACCGTCT GTTCACATTG CAAAGGAAGG GAAGCTGAGC TATATTGTAA AACGGTATCT
CGAGTGTCTG AGCTGGAGAT GCATTTTGGG AAGTTGTGGA CACAGTGTCA GGAGTGCCAA GGTTCACTTC ATCAAGATAT
TCTCTGCACA AGTCGGGATT GTCCAATCTT TTATCGACGA AAGAAGGCAC AGAAAGAAAT GTCTGAAGCA CAATCACAAT
TGGACCGGTG GAGCTTTTAA GTTTGGTCAA GGTCAGTTTT TTTTTTTCAA TTTTCTTCCA TCCCCAGTCT TTTGTCTTCA
CACTCTTTTA GACAATGAAT TTCATCCATT CATTAATCCA AATCCAACTA TTGCAATTGA AATCACTCTA ACATTTAGTC
ATCAAAACTA AATTGTATTT TGTGTAACAT TTGAACTTTC TTCTAAGATT CTGCAGTTTT GGGTATGTAT ATGCACGTGC
TCGTGTCTAG GGATTATTTA GAGATTATTA GGTGGGAATA GGGGCCAAGA GTATTCAAC

>Vigan.02G201300.01
ATGAGCAACG CTTCACGAAA GCGCGCGGCG TCGGCGGTGG CGCCACAACC TCCGCCGCCA AAGCAAGTCT TAATGACTCA
GGAAGAGGAC TTCATGGACG AAGACGTGTT CATCGACCAA ACCCTTGTTT CAGAAGATGA AGAGTCCCTC ATTCTCCGCG
ACATCGAGCA GCGCCACGCC CTCGCCGCGC GGCTATCCAA GTGGACGCGT CCTCCTCTCT CTGATGATTA CGTCGCACAA
TCTCGAGGCG TCGTTTTTCA GCAGTTGGAG ATTGATTATG TGATCGGGGA GAGTCACAGG GAGTTGCTGC CGAACTTGTC
TGGACCTGCT GCTATTATCA GAATTTTTGG TGTTACGAAA GAAGGACACA GTGTTTGCTG CAATGTTCAC GGCTTTGAAC
CATATTTCTA CATCTCTTGC CCTCCTGGAA TGGGTCCAGA TGATATCTCT CATTTTCACC AAGCACTTGA GGGAAGGATG
AGAGAAGCCA ATAGAAATAG TAATGTAGGA AAATTCGTTC GCCGCATTGA AATGGTGCAG AGGAGAAGTA TTATGTACTA
TCAGCAATCT GATTCTCAGC CCTTTCTCAA AATAGTAGTT GCACTCCCAA CAATGGTTGC CAGCTGCCGT GGTATTCTTG
ATAGGGGTAT TCAGCTTGAT GGTCTGGGAA TGAAGAGCTT CTTGACTTAT GAAAGCAATG TACTTTTTGC TCTACGGTTC
ATGATTGATT GCAACATAGT TGGTGGAAAT TGGATTGAAA TTCTGGCAGG AAAATATAAA AAGATAGTGA AAAGCTTGTC
TTATTGCCAG TTGGAGTTTG ATTGCCTGTA TTCTGATTTG ATTAGTCATG CTCCAGAAGG GGAGTATTCA AAGATGGCTC
CATTTCGCAT ATTGAGTTTT GACATTGAGT GTGCTGGTCG TAAAGGTCAC TTTCCCGAGC CTAGCCATGA TCCTGTTATC
CAGATTGCTA ATTTGGTTAC TTTACAAGGA GAAGACCAGC CACTTATTCG TAATGTGATG ACCCTTAAAT CATGTTCTCC
TATTGTTGGT GTTGATGTGA TGTCATTTGA TACGGAAAGA GAAGTCCTAC TTGCTTGGAG GGATTTTCTT CGGGAAGTGG
ACCCTGATAT TATTATTGGA TATAATATCT GCAAATTTGA CCTGCCATAT CTCATTGAGA GAGCTGCAAA CCTGAAGATA
GCAGAATTTC CAATTCTTGG CCGTATCAGG AACAGTAGAG TTCGGGTAAA GGATACAACT TTTTCATCAA GGCAGTATGG
GACCAGGGAA AGTAAAGAAG TTACAGTAGA AGGGAGAGTT CAGTTTGACT TACTCCAGGT TATGCAAAGA GACTACAAAT
TAAGTTCTTA TTCACTAAAT TCTGTCTCAG CACACTTCCT TTCTGAGCAG AAAGAGGATG TCCATCATTC TATTATATCT
GATCTTCAGA ATGGAACTGC AGAAACTAGG AGGCGCCTTG CTGTGTATTG TTTGAAGGAT GCATATCTTC CTCAGCGGCT
TTTGGATAAA CTGATGTTCA TTTACAACTA TGTGGAGATG GCTCGAGTAA CAGGTGTTCC AATTTCTTTT CTACTTTCCA
GAGGCCAAAG CATTAAGGTA CTTTCTCAAC TTCTTAGGAA GGCAAGACAG AAGAATCTGG TCATTCCTAA TGTCAAGCAG
GTTGGGTCTG AACAAGGAAC ATTTGAAGGT GCCACTGTAT TGGAGGCAAG AGCTGGATTT TATGAAAAAC CAATCGCTAC
GTTAGATTTT GCATCCCTGT ATCCATCTAT TATGATGGCC TATAATTTAT GTTATTGCAC TCTGGTCACT TCTGAAGATG
CTCGCAAGCT CAACATCCCT TCAGAGTCCT TGAACAGAAC TCCATCTGGT GAAACATTTG TTAAATCAAA TCTGCAGAAG
GGAATACTGC CTGAAATACT TGAAGAGCTA TTAACAGCCC GTAAAAGGGC AAAAGCAGAT TTAAAGGAGG CAAAGGATCC
CCTGGAGAGG GCAGTGCTAG ATGGTAGGCA GCTGGCCCTG AAAATTAGTG CAAATTCCGT CTATGGGTTT ACTGGGGCTA
CCATTGGTCA GTTACCATGT TTAGAGATAT CATCGAGTGT AACAAGCTAT GGTCGACAAA TGATTGAGCA CACAAAAAAA
CTTGTGGAAG ATAAATTCAC GACACTTAAT GGCTATGAAC ACAATGCTGA GGTAATATAT GGAGACACGG ATTCAGTCAT
GGTACAATTT GGTGTTTCTG CAGTAGAACA GGCCATGAAC TTGGGGCGAG AAGCTGCCGA ATATATAAGT GGAACTTTCA
CAAAACCCAT CAAGCTAGAA TTTGAGAAGG TTTATTATCC ATATCTCTTG ATTAGCAAGA AGAGATATGC TGGTTTGTTT
TGGACAAAAC CAGACAAGTT CGACAAAATG GACACTAAAG GTATTGAAAC AGTTCGAAGA GACAATTGTT TGTTGGTCAA
AAACCTGGTG AATGATTGTC TTCACAAAAT ACTGATTGAC AGAGACATTC CAGGGGCTGT CCAGTATGTC AAGAACGCAA
TTTCAGATCT ACTCAGGAAT CGTATGGATT TATCACTGTT GGTTATTACA AAGGGTTTAA CAAAGACAGG AGATGATTAT
GAAGTAAAGG CAGCTCATGT TGAACTTGCT GAAAGGATGC GCAAGCGAGA TGCGGCCACT GCTCCAAATG TTGGAGACAG
AGTACCTTAT GTAATTATCA AAGGTGCAAA AGGTGCGAAG GCATATGAGA AATCAGAGGA CCCTATTTAT GTTCTAGAGA
ACAACATACC AATAGATGCT CAATACTATC TTGAGAATCA AATTAGCAAG CCGATCCTCA GAATTTTTGA GCCAATTCTG
AAGAATGCTA GCAGAGAACT TCTCCATGGA AGTCATACAA GATCTATTTC TATTTCTACT CCGTCAAATA GTGGCTTATG
GAAATTTGCT AAGAAAGAGC TTACCTGCAT TGGCTGTAAA GCTGTATTAG GGAAGGATCA TCACACCGTC TGTTCACATT
GCAAAGGAAG GGAAGCTGAG CTATATTGTA AAACGGTATC TCGAGTGTCT GAGCTGGAGA TGCATTTTGG GAAGTTGTGG
ACACAGTGTC AGGAGTGCCA AGGTTCACTT CATCAAGATA TTCTCTGCAC AAGTCGGGAT TGTCCAATCT TTTATCGACG
AAAGAAGGCA CAGAAAGAAA TGTCTGAAGC ACAATCACAA TTGGACCGGT GGAGCTTTTA A

>Vigan.02G201300.01
MSNASRKRAA SAVAPQPPPP KQVLMTQEED FMDEDVFIDQ TLVSEDEESL ILRDIEQRHA LAARLSKWTR PPLSDDYVAQ
SRGVVFQQLE IDYVIGESHR ELLPNLSGPA AIIRIFGVTK EGHSVCCNVH GFEPYFYISC PPGMGPDDIS HFHQALEGRM
REANRNSNVG KFVRRIEMVQ RRSIMYYQQS DSQPFLKIVV ALPTMVASCR GILDRGIQLD GLGMKSFLTY ESNVLFALRF
MIDCNIVGGN WIEILAGKYK KIVKSLSYCQ LEFDCLYSDL ISHAPEGEYS KMAPFRILSF DIECAGRKGH FPEPSHDPVI
QIANLVTLQG EDQPLIRNVM TLKSCSPIVG VDVMSFDTER EVLLAWRDFL REVDPDIIIG YNICKFDLPY LIERAANLKI
AEFPILGRIR NSRVRVKDTT FSSRQYGTRE SKEVTVEGRV QFDLLQVMQR DYKLSSYSLN SVSAHFLSEQ KEDVHHSIIS
DLQNGTAETR RRLAVYCLKD AYLPQRLLDK LMFIYNYVEM ARVTGVPISF LLSRGQSIKV LSQLLRKARQ KNLVIPNVKQ
VGSEQGTFEG ATVLEARAGF YEKPIATLDF ASLYPSIMMA YNLCYCTLVT SEDARKLNIP SESLNRTPSG ETFVKSNLQK
GILPEILEEL LTARKRAKAD LKEAKDPLER AVLDGRQLAL KISANSVYGF TGATIGQLPC LEISSSVTSY GRQMIEHTKK
LVEDKFTTLN GYEHNAEVIY GDTDSVMVQF GVSAVEQAMN LGREAAEYIS GTFTKPIKLE FEKVYYPYLL ISKKRYAGLF
WTKPDKFDKM DTKGIETVRR DNCLLVKNLV NDCLHKILID RDIPGAVQYV KNAISDLLRN RMDLSLLVIT KGLTKTGDDY
EVKAAHVELA ERMRKRDAAT APNVGDRVPY VIIKGAKGAK AYEKSEDPIY VLENNIPIDA QYYLENQISK PILRIFEPIL
KNASRELLHG SHTRSISIST PSNSGLWKFA KKELTCIGCK AVLGKDHHTV CSHCKGREAE LYCKTVSRVS ELEMHFGKLW
TQCQECQGSL HQDILCTSRD CPIFYRRKKA QKEMSEAQSQ LDRWSF*