GBrowse Details

Vigan.02G204700.01

Basic Information:
Name: Vigan.02G204700.01
Multiple alignment
Variant Information
Position: Chr02:27677460..27680308 (+ strand)
Length: 2849
Functional Information:
Description: Similar to Uncharacterized protein. [I1KBF7, Glycine max]
GO: Biological Process: glutamine catabolic process (GO:0006543)
Biological Process: carbamoyl phosphate biosynthetic process (GO:0070409)
InterPro: Carbamoyl-phosphate synthase, small subunit N-terminal domain (IPR002474)
Carbamoyl-phosphate synthase, small subunit (IPR006274)
Glutamine amidotransferase (IPR017926)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.87,74.01,53.16,58.79,92.32,89.07,18.20,39.75
Arabidopsis thaliana homolog: AT3G27740.1
Automatic updates:
Name: NM_001254660 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbamoyl-phosphate synthase small chain-like (LOC100788470), mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
15060591 NCBI(pubmed)
Status: Known Variant
Name: NM_001425276 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbamoyl-phosphate synthase small chain, chloroplastic (LOC100806168), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:27677460..27677619 (+ strand)
Length: 160
Type: five_prime_UTR
Position: Chr02:27677620..27677743 (+ strand)
Length: 124
Type: CDS
Position: Chr02:27677954..27678086 (+ strand)
Length: 133
Type: CDS
Position: Chr02:27678182..27678270 (+ strand)
Length: 89
Type: CDS
Position: Chr02:27678361..27678421 (+ strand)
Length: 61
Type: CDS
Position: Chr02:27678516..27678583 (+ strand)
Length: 68
Type: CDS
Position: Chr02:27678691..27678819 (+ strand)
Length: 129
Type: CDS
Position: Chr02:27678893..27679002 (+ strand)
Length: 110
Type: CDS
Position: Chr02:27679090..27679437 (+ strand)
Length: 348
Type: CDS
Position: Chr02:27679672..27679837 (+ strand)
Length: 166
Type: CDS
Position: Chr02:27679946..27680034 (+ strand)
Length: 89
Type: CDS
Position: Chr02:27680035..27680308 (+ strand)
Length: 274
Type: three_prime_UTR


>Vigan.02G204700.01
TGTTACCAGT TGCATGGAGG AAAAATGATT ATTAAAAAAG TAAAAAAGGG AAAAAGAAGG TGATGAAATT GCAAAATAAA
AACCTAGGTA ACGCGAGGCT GTGCACTACG ACAGGACTGG TTTCACAGAC ATACCAGTAA CGGTGCTGCA GTGACTGTCC
ATGGCGACAA AAGCTTTGTC TTTCGCTTTG TCCTTCAACG ACCTCACCAA CTGCTTCTCC TCCAGTCCGC CATCCGCCGC
CGCCGCAGCT AAAGTTTCCG TCTTTACCGT CAGATGCTCT TCGGGTAATG GAGAAAGACC TTGGAAAAAC TCAGATGCTA
GACTGGTTCT AGAAGATGGT TCAATTTGGA GAGCGAAATC GTTTGGTGCT TCAGGGACTC AAGTTGGCGA AGTTGTTTTC
AATACATCAC TGACAGGGTA TCAGGAAATT TTGACAGATC CTAGTTATGC TGGCCAGTTT GTGCTGATGA CAAATCCTCA
TATTGGGAAT ACTGGCGTTA ATTTTGATGA TGAGGAATCG ATGCAGTGTT TCCTTGCTGG TCTTGTAATT AGAAGTTTGA
GCATCAGTAC CTCTAACTGG AGATGTGCGA AGGCTCTGGG TGAATACTTA GCTGAAAGGA ATATCATGGG AATTTATGAT
GTTGATACTC GTGCAATCAC ACGCAGATTG CGGCAAGATG GCAGTCTTAT TGGTGTTTTG AGCACGGACA ATTCCAAAAC
AGATGAGCAA CTGCTTCAGA TGTCTAAGTC ATGGGACATT GTTGGTGTTG ATCTAATAAG TGGAGTATCA TGCAAAAGTC
CACATGAGTG GGTTGATAAA ACAAAGCAAC AATGGGAGTT TAGTTCCGGT AAAGTGGCAA GAGAGAATTT CCATGTGGTT
GCTTATGATT TTGGAATCAA GCATAATATT CTTAGACGCC TAGCATCTTA TGGCTGCAAA ATCACTGTTG TGCCATCTAC
ATGGCCAGCA TCAGAAACTT TGAAGATGAA GCCAGATGGG GTTCTTTTTA GTAATGGCCC TGGAGATCCA TCTGCTGTTC
CATATGCTGT TGAAACAGTG AAGAATATAA TTGGAAAGGT GCCTGTTTTT GGAATTTGCA TGGGCCATCA ATTGCTAGGC
CAGGCTTTAG GAGGTAAAAC ATTCAAGATG AAATTTGGTC ACCACGGAGG AAATCATCCT GTTCGTAACC TTCAAACCGG
CCATGTTGAA ATTAGTGCTC AGAACCACAA CTATGCTGTT GACCCTGCAA CACTGCCGGA AGGAGTGAAG GTTACTCATA
TCAATCTCAA TGATGGAAGC TGTGCCGGTC TTTCTTTCCC TGCACAACAA CTTATGTCTC TTCAATACCA CCCTGAAGCA
TCCCCTGGAC CTCATGATTC TGACTACGCT TTTAAGGAGT TTATAGAGCT AATGAAGCAA GGAAAAAACA GAACAAAGGA
AAGTCTACCC GAATTATCTG CACTGCATAG CAGTTGAAGC ATGCTGTTCT CCTCTGGGCA GAAAGAATAA AAGCATCTGC
TAAGAAATTA TGAGTGTCTA TGATTTTGTA GATGAGTTTG TTAAGGTTTT CTAGGGTTCA ATTAAGATTT TCTCTTAATT
TTCTGTGCTA GTGTGAGTAT ATGGTCATGA TTGTCATAAA CCTCAATGAG GCTTAATGTT CTGCTACTCG CAGTCAGCAT
CAAACTTTGG TTGCTGCCTT TACTAATGTT AAGATTAATA ATTGTTTCCT TTTCAAAGAT TTTGAGACTA A

>Vigan.02G204700.01
ATGGCGACAA AAGCTTTGTC TTTCGCTTTG TCCTTCAACG ACCTCACCAA CTGCTTCTCC TCCAGTCCGC CATCCGCCGC
CGCCGCAGCT AAAGTTTCCG TCTTTACCGT CAGATGCTCT TCGGGTAATG GAGAAAGACC TTGGAAAAAC TCAGATGCTA
GACTGGTTCT AGAAGATGGT TCAATTTGGA GAGCGAAATC GTTTGGTGCT TCAGGGACTC AAGTTGGCGA AGTTGTTTTC
AATACATCAC TGACAGGGTA TCAGGAAATT TTGACAGATC CTAGTTATGC TGGCCAGTTT GTGCTGATGA CAAATCCTCA
TATTGGGAAT ACTGGCGTTA ATTTTGATGA TGAGGAATCG ATGCAGTGTT TCCTTGCTGG TCTTGTAATT AGAAGTTTGA
GCATCAGTAC CTCTAACTGG AGATGTGCGA AGGCTCTGGG TGAATACTTA GCTGAAAGGA ATATCATGGG AATTTATGAT
GTTGATACTC GTGCAATCAC ACGCAGATTG CGGCAAGATG GCAGTCTTAT TGGTGTTTTG AGCACGGACA ATTCCAAAAC
AGATGAGCAA CTGCTTCAGA TGTCTAAGTC ATGGGACATT GTTGGTGTTG ATCTAATAAG TGGAGTATCA TGCAAAAGTC
CACATGAGTG GGTTGATAAA ACAAAGCAAC AATGGGAGTT TAGTTCCGGT AAAGTGGCAA GAGAGAATTT CCATGTGGTT
GCTTATGATT TTGGAATCAA GCATAATATT CTTAGACGCC TAGCATCTTA TGGCTGCAAA ATCACTGTTG TGCCATCTAC
ATGGCCAGCA TCAGAAACTT TGAAGATGAA GCCAGATGGG GTTCTTTTTA GTAATGGCCC TGGAGATCCA TCTGCTGTTC
CATATGCTGT TGAAACAGTG AAGAATATAA TTGGAAAGGT GCCTGTTTTT GGAATTTGCA TGGGCCATCA ATTGCTAGGC
CAGGCTTTAG GAGGTAAAAC ATTCAAGATG AAATTTGGTC ACCACGGAGG AAATCATCCT GTTCGTAACC TTCAAACCGG
CCATGTTGAA ATTAGTGCTC AGAACCACAA CTATGCTGTT GACCCTGCAA CACTGCCGGA AGGAGTGAAG GTTACTCATA
TCAATCTCAA TGATGGAAGC TGTGCCGGTC TTTCTTTCCC TGCACAACAA CTTATGTCTC TTCAATACCA CCCTGAAGCA
TCCCCTGGAC CTCATGATTC TGACTACGCT TTTAAGGAGT TTATAGAGCT AATGAAGCAA GGAAAAAACA GAACAAAGGA
AAGTCTACCC GAATTATCTG CACTGCATAG CAGTTGA

>Vigan.02G204700.01
MATKALSFAL SFNDLTNCFS SSPPSAAAAA KVSVFTVRCS SGNGERPWKN SDARLVLEDG SIWRAKSFGA SGTQVGEVVF
NTSLTGYQEI LTDPSYAGQF VLMTNPHIGN TGVNFDDEES MQCFLAGLVI RSLSISTSNW RCAKALGEYL AERNIMGIYD
VDTRAITRRL RQDGSLIGVL STDNSKTDEQ LLQMSKSWDI VGVDLISGVS CKSPHEWVDK TKQQWEFSSG KVARENFHVV
AYDFGIKHNI LRRLASYGCK ITVVPSTWPA SETLKMKPDG VLFSNGPGDP SAVPYAVETV KNIIGKVPVF GICMGHQLLG
QALGGKTFKM KFGHHGGNHP VRNLQTGHVE ISAQNHNYAV DPATLPEGVK VTHINLNDGS CAGLSFPAQQ LMSLQYHPEA
SPGPHDSDYA FKEFIELMKQ GKNRTKESLP ELSALHSS*