VIGGS:GBrowse

Vigan.02G205200.01

Basic Information:

Name:	Vigan.02G205200.01 Multiple alignment Variant Information
Position:	Chr02:27725417..27726461 (+ strand)
Length:	1045

Functional Information:

Description:	Similar to UPF0235 protein C15orf40 homolog isoform X1. [XP_004502908.1, Cicer arietinum]
InterPro:	Protein of unknown function DUF167 (IPR003746)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:7.00,9.34,9.77,6.99,12.70,17.84,10.80,7.94
Arabidopsis thaliana homolog:	AT1G49170.1

Automatic updates:

Name:	NM_001250704 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527290 (LOC100527290), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251604 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499954 (LOC100499954), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:27725417..27725534 (+ strand)
Length:	118
Type:	five_prime_UTR

Position:	Chr02:27725535..27725694 (+ strand)
Length:	160
Type:	CDS

Position:	Chr02:27725775..27725863 (+ strand)
Length:	89
Type:	CDS

Position:	Chr02:27726127..27726255 (+ strand)
Length:	129
Type:	CDS

Position:	Chr02:27726256..27726461 (+ strand)
Length:	206
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G205200.01
TAACTTTTTA ATCCCATGCA GCAAACTGCA TCTTATAATC GGTACTCTCA CGCATCATAA AATTAAGAAG AGAAGGACGG
CGTTCCTTGT ACGCAACGGA AAGGCGTCGT TTTAAATTAT GCCGCCGGCG AAGAAGGGAA AAGCAAAGGC CGAGCCTAGG
GTAACGCCGC CGCCGGAGAA ACCTAACGAC TTTCCGTCTT GTATTCGCTG CGTGCCTCCT TCCTCCGTCG CCGTAACCAT
CCACGCCAAA CCTGGTTCCA AATCTGCATC CGTAACCGAT ATTAGCGATG AAGCGGTGGG AGTTCAAATT GACGCACCTG
CCAGGGATGG CGAAGCAAAT GCAGCTCTTC TCGATTTCTT CAGCTCTGTT TTAGGTGTGA AACGAAGACA AGTCTCTATA
GGCACAGGTT CTAAGTCGAG AGATAAAACG GTGATCGTGG AAGATGTGAC TCAGCAATAT GTTTTTGATG CTTTGGATAA
AGTCTCGAAG CAGTAGTGAT GTTTTATTGA TGAGGAGGCA TCTTGCTGTT ATTATTATTA TAATTAATAT CTGTTAGAAG
AGTAATATAG TGGTAGTGTT GCAGTGAAGA GCCTTGTATT GGTTTTATTT TGGTTTTTTC CTTCATAGTG TATACTTTGA
CAACTTGATG GAGTGCATGT TTGGATTCAA TTCAATTCTT CTATTCATTC CAATTCCATA AA

[show][hide][copy]CDS

>Vigan.02G205200.01
ATGCCGCCGG CGAAGAAGGG AAAAGCAAAG GCCGAGCCTA GGGTAACGCC GCCGCCGGAG AAACCTAACG ACTTTCCGTC
TTGTATTCGC TGCGTGCCTC CTTCCTCCGT CGCCGTAACC ATCCACGCCA AACCTGGTTC CAAATCTGCA TCCGTAACCG
ATATTAGCGA TGAAGCGGTG GGAGTTCAAA TTGACGCACC TGCCAGGGAT GGCGAAGCAA ATGCAGCTCT TCTCGATTTC
TTCAGCTCTG TTTTAGGTGT GAAACGAAGA CAAGTCTCTA TAGGCACAGG TTCTAAGTCG AGAGATAAAA CGGTGATCGT
GGAAGATGTG ACTCAGCAAT ATGTTTTTGA TGCTTTGGAT AAAGTCTCGA AGCAGTAG

[show][hide][copy]PROTEIN

>Vigan.02G205200.01
MPPAKKGKAK AEPRVTPPPE KPNDFPSCIR CVPPSSVAVT IHAKPGSKSA SVTDISDEAV GVQIDAPARD GEANAALLDF
FSSVLGVKRR QVSIGTGSKS RDKTVIVEDV TQQYVFDALD KVSKQ*