GBrowse Details

Vigan.02G206200.01

Basic Information:
Name: Vigan.02G206200.01
Multiple alignment
Variant Information
Position: Chr02:27944275..27947079 (+ strand)
Length: 2805
Functional Information:
Description: Similar to Ribosomal protein L17. [B9H473, Populus trichocarpa]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L17 (IPR000456)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.59,19.83,4.79,5.60,4.65,6.75,5.98,4.78
Arabidopsis thaliana homolog: AT5G09770.1
Automatic updates:
Name: NM_001250881 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 50S ribosomal protein L17 (LOC100305861), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253978 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L17 (LOC100785280), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:27944275..27945427 (+ strand)
Length: 1153
Type: five_prime_UTR
Position: Chr02:27945428..27945483 (+ strand)
Length: 56
Type: CDS
Position: Chr02:27945582..27945636 (+ strand)
Length: 55
Type: CDS
Position: Chr02:27945712..27945762 (+ strand)
Length: 51
Type: CDS
Position: Chr02:27946346..27946437 (+ strand)
Length: 92
Type: CDS
Position: Chr02:27946518..27946595 (+ strand)
Length: 78
Type: CDS
Position: Chr02:27946818..27946965 (+ strand)
Length: 148
Type: CDS
Position: Chr02:27946966..27947079 (+ strand)
Length: 114
Type: three_prime_UTR


>Vigan.02G206200.01
GAGAAAGTAA AAATAGAAAA GTAAAAATCA AATCCCGCAG ATATTTGCCG AGGAAAGAGA AGCCAAGCGA AGCTCATTTT
CTTTCTCTGG CAGCTTAGAC ATAGCACAAT CACAAGCTCC ACTCTAGGGT TTCGCTCTTT ACTTTCTCTT CACCACTAAC
TCGTGAGTCT TCTCTCAACC TTACTATGCT TTTACCTTTC CGCTTCTTAT TTAGGGTTTA AATCCTCTCC TGTAATTTCA
ATTTGGAACT TGCTTGAAGC CTAATTTATG TTGTTTTTCT CTGTTTTTCG AGCCTCAGTG CTTGAATTTG AATGTCGGAT
ATTCGACCTT ATTTTTCTTT TCTTTTTTAT GTACGTTAGG ATCAATAGTG TTATCAATGT CGTTTACGCG AAAACTACCG
GTTAGTAAAA CATAAACGGA AGCTAGAAAA TGGAATTGTA CTTGCGTAGC CTTTATTTAA TATGAAGTAT GATACCAGCC
AGATAAATAA CTATTGCCAG TTAGGGAAAA AACACTAGGA AGGAGAGAAA ATACAGAGGA GAGTACTAAT GATAACTAGG
CTCTTCTTCT CGCTCTTTCA ATACTATTAA TCATTCTTCT AGTGTTGGAG TAAGTAACTT CCTCATGTGG TTATTTTGCG
CTAGCCTCTA TGGTCACTAT CTTTGTGAGA CCATATGACA GTATCCTAGT TAGCGATTCA CCCTTTGGCA TTGAAAGAAT
TTTGGAGACA TGAGAATGGG GAATCATTAT AGTTGCCGTG ACAGTGTATT CTTAAATCTT AATAGGTTAT CTTTTCTTAG
TGAGGAATCA CTAAAGCTAT GCTTTGGTTT AGACTAAAAA TGCATAATAA AGGCCTTTTT ATCATTGCAT CTTCTTGTGT
TGGACTATCT GCTTGGTTGT CTCTGTTCCA TTTTATAATG AGCATTCTAC ATGTTGTGGA ACCATTTCAT CTTTATTTCG
TATGGAAATT AATTGTGTGG AAATTAATTT CGTATGCTAC ACTTGCCTAA AATATGTTTG ACTGATGTTA TTGGAAAGAA
ACTTGTTTGG TCAATCCTAC ATGTTGTACC ATTACATCTT TAGATCCTTT TTCTATCCCC GAAGCAGGAT TCTTTTTTAG
GCGTTCACCC ATAGAATTAA CTGGATTACG AAAATGACAA AATTCAGGAA GCTGGGTCGA CCCACCGGTC ACCGGATGTC
CATGCTCAGA ACCATGGTTT CGCAGTTGGT GAAACACGAG CGTATCGAAA CTACTGTGGC CAAGGCCAAA GAGATCAGAC
GACTCGCCGA TAATATGGTT CAGCTTGGAA AGGAGGGATC CCAATGTGCT GCAAGTCGTG CTGCTAGTTT TGTGCGAGGA
GATGATGTCC TTCACAAGCT GTTTACAGAA CTGGCTTATC GGTACAAGGA TAGAGCTGGA GGATACACCA GATTGCTTCG
GACCCGAATT CGAGTGGGTG ATGCTGCACC AATGGCCTAT ATTGAGTTTA TTGACAGAGA AAATGAGCTT AGGCAGGCAA
AGCCACCAAC TCCTCAGCCG CCACAGAGAG CACCCCTAGA CCCCTGGACA CGTTCTCGTC TCAGTAGACA ATTTGCTCCT
CCTAAAGAGG AAAAATCTGG ATCTGATTTG TGATTCTATC GATAGTAATG CGGATAAGCC GATACTATGT TTTTCCCAAC
GTAGCATGGC ATATCATAAT TTTGGTCTTG CTTATTTAAT CAATCTTCAA ATGGTTTGAA AAAAAAA

>Vigan.02G206200.01
ATGACAAAAT TCAGGAAGCT GGGTCGACCC ACCGGTCACC GGATGTCCAT GCTCAGAACC ATGGTTTCGC AGTTGGTGAA
ACACGAGCGT ATCGAAACTA CTGTGGCCAA GGCCAAAGAG ATCAGACGAC TCGCCGATAA TATGGTTCAG CTTGGAAAGG
AGGGATCCCA ATGTGCTGCA AGTCGTGCTG CTAGTTTTGT GCGAGGAGAT GATGTCCTTC ACAAGCTGTT TACAGAACTG
GCTTATCGGT ACAAGGATAG AGCTGGAGGA TACACCAGAT TGCTTCGGAC CCGAATTCGA GTGGGTGATG CTGCACCAAT
GGCCTATATT GAGTTTATTG ACAGAGAAAA TGAGCTTAGG CAGGCAAAGC CACCAACTCC TCAGCCGCCA CAGAGAGCAC
CCCTAGACCC CTGGACACGT TCTCGTCTCA GTAGACAATT TGCTCCTCCT AAAGAGGAAA AATCTGGATC TGATTTGTGA


>Vigan.02G206200.01
MTKFRKLGRP TGHRMSMLRT MVSQLVKHER IETTVAKAKE IRRLADNMVQ LGKEGSQCAA SRAASFVRGD DVLHKLFTEL
AYRYKDRAGG YTRLLRTRIR VGDAAPMAYI EFIDRENELR QAKPPTPQPP QRAPLDPWTR SRLSRQFAPP KEEKSGSDL*