GBrowse Details

Vigan.02G214000.01

Basic Information:
Name: Vigan.02G214000.01
Multiple alignment
Variant Information
Position: Chr02:29072524..29075410 (- strand)
Length: 2887
Functional Information:
Description: Similar to ubiquitin-conjugating enzyme E2 27-like isoform X2. [XP_004501732.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal (IPR000449)
Ubiquitin-conjugating enzyme, E2 (IPR000608)
UBA-like (IPR009060)
Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (IPR015940)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.00,35.44,36.28,29.80,51.62,93.43,28.18,32.34
Arabidopsis thaliana homolog: AT5G50870.2
Automatic updates:
Name: NM_001349835 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ubiquitin-conjugating enzyme E2 (LOC100527458), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 27-like (LOC100808816), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:29072524..29072598 (- strand)
Length: 75
Type: three_prime_UTR
Position: Chr02:29072599..29072712 (- strand)
Length: 114
Type: CDS
Position: Chr02:29073118..29073207 (- strand)
Length: 90
Type: CDS
Position: Chr02:29073378..29073537 (- strand)
Length: 160
Type: CDS
Position: Chr02:29074689..29074737 (- strand)
Length: 49
Type: CDS
Position: Chr02:29074883..29075060 (- strand)
Length: 178
Type: CDS
Position: Chr02:29075061..29075410 (- strand)
Length: 350
Type: five_prime_UTR


>Vigan.02G214000.01
GTAGGTAACA AATTTCAGAG TGGCGTCGTG TTTTTTTATG ATAAATAAAA CTCAAAAATC AAACCAGATT TCGAGAACAC
GCGTCACTCA GCACCAGTCC GGCAAGGGCA AAGGAAATTG TAACGACGTT TTCCGTAACG GCTGAAAAAA TTATAGTATA
TGTTAAAGAA AAGAGAAAAA ATATATCATT CAGTCATTCC CTCGCTAGTG AAAAAGCCAC ATAACCTTTA TTCTCCCCGC
ACACTTCTTT TCGATCATTT TTGTTTTCCG CTATAAGAGG TGTTTTTTTG GGTTCTCCCC GTCTGTGACT CACTGTCTAG
GGTTTTGTTA TTGGTGGTGA CAGAGTAAAG ATGATAGACT TTGCGCGCGT GCAGAAGGAG CTGGTGGAAT GCAGCAAGGA
CTCAGAGGGA TCGGGCATCA AAGTGAGTCA GAAAAGTGAC GATCTTGTTC AGTTAATGGG CACCATTCCG GGTCCTGTTG
GAACTCCCTA CGATGGAGGC ACTTTTCAGA TTGATATCAC ATTGCCAGAG GGATACCCGT TTGAACCCCC CAAGATGCAG
TTCAAGACCA AAGTTTGGCA CCCTAATATC AGCAGCCAAA GTGGAGCTAT TTGCCTGGAC ATCTTGAAAG ACCAGTGGAG
CCCGGCACTC ACTCTGAAGA CTGCACTTCT TTCGGTGCAA GCACTTCTCT CTGCCCCTCA GCCCGATGAT CCTCAAGATG
CTGTGGTAGC GAAGCAATAT CTTGAAAACT ATCAGACATT TGTTAGCACT GCCCGCTACT GGACTGAAAG TTTTGCCAAG
GCATCAACAC GTGGGATTGA AGACAGGGTA CAGAAATTTG TTGAGATGGG ATTTCCAGAA GCTCAAGTAA GGAACATTCT
GGAAGCTGTT GGTGGTGATG AAAACTTGGC TCTGGAAAGG TTGCTGCAGC ACCAAGTTTG AAGTATCTTC TGAAGCGTTC
TGTCATGGTC AAATTTAGGA TGAGATGTGG CCATAAGATG ATGGAACCAT ATAGAC

>Vigan.02G214000.01
ATGATAGACT TTGCGCGCGT GCAGAAGGAG CTGGTGGAAT GCAGCAAGGA CTCAGAGGGA TCGGGCATCA AAGTGAGTCA
GAAAAGTGAC GATCTTGTTC AGTTAATGGG CACCATTCCG GGTCCTGTTG GAACTCCCTA CGATGGAGGC ACTTTTCAGA
TTGATATCAC ATTGCCAGAG GGATACCCGT TTGAACCCCC CAAGATGCAG TTCAAGACCA AAGTTTGGCA CCCTAATATC
AGCAGCCAAA GTGGAGCTAT TTGCCTGGAC ATCTTGAAAG ACCAGTGGAG CCCGGCACTC ACTCTGAAGA CTGCACTTCT
TTCGGTGCAA GCACTTCTCT CTGCCCCTCA GCCCGATGAT CCTCAAGATG CTGTGGTAGC GAAGCAATAT CTTGAAAACT
ATCAGACATT TGTTAGCACT GCCCGCTACT GGACTGAAAG TTTTGCCAAG GCATCAACAC GTGGGATTGA AGACAGGGTA
CAGAAATTTG TTGAGATGGG ATTTCCAGAA GCTCAAGTAA GGAACATTCT GGAAGCTGTT GGTGGTGATG AAAACTTGGC
TCTGGAAAGG TTGCTGCAGC ACCAAGTTTG A

>Vigan.02G214000.01
MIDFARVQKE LVECSKDSEG SGIKVSQKSD DLVQLMGTIP GPVGTPYDGG TFQIDITLPE GYPFEPPKMQ FKTKVWHPNI
SSQSGAICLD ILKDQWSPAL TLKTALLSVQ ALLSAPQPDD PQDAVVAKQY LENYQTFVST ARYWTESFAK ASTRGIEDRV
QKFVEMGFPE AQVRNILEAV GGDENLALER LLQHQV*