GBrowse Details

Vigan.02G232600.01

Basic Information:
Name: Vigan.02G232600.01
Multiple alignment
Variant Information
Position: Chr02:32241850..32246037 (- strand)
Length: 4188
Functional Information:
Description: Similar to uncharacterized LOC101204444. [XP_004161368.1, Cucumis sativus]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.26,0.46,9.54,5.17,0.08,2.92,0.93,17.25
Automatic updates:
Name: NM_001254334 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion c (SEOC), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Name: NM_001254532 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion d (SEOD), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:32241850..32242195 (- strand)
Length: 346
Type: three_prime_UTR
Position: Chr02:32242196..32242813 (- strand)
Length: 618
Type: CDS
Position: Chr02:32243336..32243815 (- strand)
Length: 480
Type: CDS
Position: Chr02:32243907..32244049 (- strand)
Length: 143
Type: CDS
Position: Chr02:32244217..32244326 (- strand)
Length: 110
Type: CDS
Position: Chr02:32244412..32244860 (- strand)
Length: 449
Type: CDS
Position: Chr02:32245493..32245591 (- strand)
Length: 99
Type: CDS
Position: Chr02:32245761..32245967 (- strand)
Length: 207
Type: CDS
Position: Chr02:32245968..32246037 (- strand)
Length: 70
Type: five_prime_UTR


>Vigan.02G232600.01
CACGTATACT CAAGCCAAAA CCTGTTTCCC TCCCACTGTG TCTTCTCATA TCTGAAACCA TTTCAGCAAC ATGAGTAGTC
GCCAGCTAAC AGCTACTCCA AAAATGTCCC AAAGGAAGGA GCGACGCATG TTCTCCACTT CTGATGACAG TGCCATGACC
AAGCAGGTTC AGACCACACA TGCCCCAGAT GGCCGTGAAA TTGATGTCAA ACCTATTCTA CAAATCGTCG ACGAAATTCT
CCTTCGGTTC ATTGCTCGCA CTGTTGAGGG TTATGAAGTG AAAAGAGACC AAGATGCATT GGAGATGACT GCTGCTCTGG
CTGAATTTGA CATGCTTGAC TCGCTGGCTT ATATCATAAA CAAAATTTCG TGTGAGCTAT CATGCAAGTG TTCGGGAGGT
GGAGATGCGC ATTCATCAAC AATGGTGTTA CTGGGTTACA TGTCTAGCTA TGCATGGCAT GCGAAAGTTG TGCTAACATT
AGCAGCCTTT GCTGTTATTT TTGGAGAGTT TTGGCTTGTC GCTCAGTTGA GTGCTGAAAA TACTCTTGCC AAGTCTGTGG
CCCTTCTTAA GCAACTGCCA GATATTGCTG AGAATTTCAT GTCATTGAAA CCCCATTTTG AAGCACTCAT TAGGCTGGTG
AAGGCTGCAA TGGATGTAAC CACCTGCATC GTTGAATTCA AGGAGCTTCC ATCTGACTAC ATTTCAGAGG ACACACCTCC
CATGTCTGTT GCCAGTACTC ACATTCCTAT TGCTTCCTAC TGGGTCATCA GAAGTATTGT GGCTTGTGCC TCTCAAATTG
CTAGTCTCAT AGGCACAAGA AATGAGTCCA TTTCATCAAC CACTGAGGCA TGGGAGTTAT CTAGTCTTGC TCACAAAGTT
ACTAGTATTC ATGAGCACCT CAAGAGCCAA CTGGTTCTTT GCTACCAATA TATAGATGAC AAGAGGCATA TAGAGGCATT
CCATAATCTG ATACGTCTTT TCGAGACAGT CCATATAGAC AACATGAAAA TTGTCAGAGC ACTGATATAT GCAAAGGATG
ATATCCTTCC ACTCTTGGAT GGAACTACAA AATCAAGGGT TAGTCTGGAG GTACTAAGGA GGAAACATGT GTTGCTGCTC
ATATCAGACC TTGATCTTTC ACAAGAAGAG ATCCTGGTAC TTGATAATTT GTACAAAGAT GCACGAGCGA GGGGTGACAC
ACACTATGAG ATGGTTTGGA TCCCAGTTGT GGACAAAGGG ATCTGGAATG AGGTGAACAA ACAGAAGTTT GAGTATTTGC
AGTCATTGAT GCCATGGTAC AGTGTCTGTG ATCCTTTCAT CATTGAACCA TCAGCAGTTA AGTACATCAA AGAAGTGTGG
AATTTCTCAA AGACAGCTAT TCTAGTGGCC CTTGATCCAC AAGGCAGATT GTCCTCCCCT AATGCAGTCC ATATGATATG
GATTTGGGGC AATTTGGCCT TCCCCTTCAC TAGTGAGAAA GAAGAATCAC TGTGGAAGCA AGAGATTTGG AGCCTTGAAC
TGCTTGTTGA TGGCATTGAT CCTACAGTTT TAGAATGGAT GGCAGAAGGA AAACTGGTAT GTCTGTATGG AGGTGAAGAC
CTGGAGTGGA TTGAGAAATT CACAGCAACA GCATTGAGTG TGGCAAAGGC TGGGAAGTTC CAGCTGGAGA TGGCATACGT
GGGAAAGAGC AACGCGAAGG AGCGGATGCA GAAGATGATA AAAGCGTTCA CTACGAGAAA GTTCAGTTAC TTTTGGCCCA
ACGTGACCTC CATTTGGTTC TTCTGGACCC GTTTGGAGAG CATGCTGTAC TCCAAGTTGC AGCACGAAAG GACGGTGGAA
AACGACGAGA TCATGAGCGA AGTGATGACT GTGCTGAGCT TCGACGGCAG TGATCGAGGG TGGGCGATTT TCTGCATGGG
CGCCACTGAT ATGGCCAGAG CCAAAGGTGA CAGTTTTTTG ATTTGCTTGC AGGACTTCGA AAAGTGGGGG CCTAGAATCG
AGGAAGATGG TGTGGTGAAA GCCATGAACG ATTACCTCAA CCAAAACAAA CCCCCACATC ACTGCAACCG TTTGATCCTT
CCTGGGAGCA CTGGTGGCAT ACCCCAGAAG GTTGTGTGCG CTGAATGTGG ACGCCAAATG GAGAAATACT TCATGTATCG
TTGCTGTGTT GAGTAAGAGC GATCAGATTA AGTTAAGTGT AGTGTACTAT CGTTGCACAC ATTTTCATTG TTTGACTATG
TTTAATGTTG GTTTGAGAGT CTAATGTTTT TAGTTTCATA ACAGAGGTTG TTCCTTTGTG AGATATGTAG TGAGATGTGA
CATGAGACGA GATGTTATTA AGATAATGTC TATGTGTATG TACTAGCTGA TCTTGAGGCC TCAGAAGTAC CATCTGTTTG
GGTAGCTAGC TGAGACCCCT TGCTTAATAA AGTGTGTTGT AGAACTTTGA TGTGATGACA GTGTTAAAGT CTTTTGCAAG
TTGTAAACAT TTATTTTTTC TTTGGTTTAT GTCTGATTGG TG

>Vigan.02G232600.01
ATGAGTAGTC GCCAGCTAAC AGCTACTCCA AAAATGTCCC AAAGGAAGGA GCGACGCATG TTCTCCACTT CTGATGACAG
TGCCATGACC AAGCAGGTTC AGACCACACA TGCCCCAGAT GGCCGTGAAA TTGATGTCAA ACCTATTCTA CAAATCGTCG
ACGAAATTCT CCTTCGGTTC ATTGCTCGCA CTGTTGAGGG TTATGAAGTG AAAAGAGACC AAGATGCATT GGAGATGACT
GCTGCTCTGG CTGAATTTGA CATGCTTGAC TCGCTGGCTT ATATCATAAA CAAAATTTCG TGTGAGCTAT CATGCAAGTG
TTCGGGAGGT GGAGATGCGC ATTCATCAAC AATGGTGTTA CTGGGTTACA TGTCTAGCTA TGCATGGCAT GCGAAAGTTG
TGCTAACATT AGCAGCCTTT GCTGTTATTT TTGGAGAGTT TTGGCTTGTC GCTCAGTTGA GTGCTGAAAA TACTCTTGCC
AAGTCTGTGG CCCTTCTTAA GCAACTGCCA GATATTGCTG AGAATTTCAT GTCATTGAAA CCCCATTTTG AAGCACTCAT
TAGGCTGGTG AAGGCTGCAA TGGATGTAAC CACCTGCATC GTTGAATTCA AGGAGCTTCC ATCTGACTAC ATTTCAGAGG
ACACACCTCC CATGTCTGTT GCCAGTACTC ACATTCCTAT TGCTTCCTAC TGGGTCATCA GAAGTATTGT GGCTTGTGCC
TCTCAAATTG CTAGTCTCAT AGGCACAAGA AATGAGTCCA TTTCATCAAC CACTGAGGCA TGGGAGTTAT CTAGTCTTGC
TCACAAAGTT ACTAGTATTC ATGAGCACCT CAAGAGCCAA CTGGTTCTTT GCTACCAATA TATAGATGAC AAGAGGCATA
TAGAGGCATT CCATAATCTG ATACGTCTTT TCGAGACAGT CCATATAGAC AACATGAAAA TTGTCAGAGC ACTGATATAT
GCAAAGGATG ATATCCTTCC ACTCTTGGAT GGAACTACAA AATCAAGGGT TAGTCTGGAG GTACTAAGGA GGAAACATGT
GTTGCTGCTC ATATCAGACC TTGATCTTTC ACAAGAAGAG ATCCTGGTAC TTGATAATTT GTACAAAGAT GCACGAGCGA
GGGGTGACAC ACACTATGAG ATGGTTTGGA TCCCAGTTGT GGACAAAGGG ATCTGGAATG AGGTGAACAA ACAGAAGTTT
GAGTATTTGC AGTCATTGAT GCCATGGTAC AGTGTCTGTG ATCCTTTCAT CATTGAACCA TCAGCAGTTA AGTACATCAA
AGAAGTGTGG AATTTCTCAA AGACAGCTAT TCTAGTGGCC CTTGATCCAC AAGGCAGATT GTCCTCCCCT AATGCAGTCC
ATATGATATG GATTTGGGGC AATTTGGCCT TCCCCTTCAC TAGTGAGAAA GAAGAATCAC TGTGGAAGCA AGAGATTTGG
AGCCTTGAAC TGCTTGTTGA TGGCATTGAT CCTACAGTTT TAGAATGGAT GGCAGAAGGA AAACTGGTAT GTCTGTATGG
AGGTGAAGAC CTGGAGTGGA TTGAGAAATT CACAGCAACA GCATTGAGTG TGGCAAAGGC TGGGAAGTTC CAGCTGGAGA
TGGCATACGT GGGAAAGAGC AACGCGAAGG AGCGGATGCA GAAGATGATA AAAGCGTTCA CTACGAGAAA GTTCAGTTAC
TTTTGGCCCA ACGTGACCTC CATTTGGTTC TTCTGGACCC GTTTGGAGAG CATGCTGTAC TCCAAGTTGC AGCACGAAAG
GACGGTGGAA AACGACGAGA TCATGAGCGA AGTGATGACT GTGCTGAGCT TCGACGGCAG TGATCGAGGG TGGGCGATTT
TCTGCATGGG CGCCACTGAT ATGGCCAGAG CCAAAGGTGA CAGTTTTTTG ATTTGCTTGC AGGACTTCGA AAAGTGGGGG
CCTAGAATCG AGGAAGATGG TGTGGTGAAA GCCATGAACG ATTACCTCAA CCAAAACAAA CCCCCACATC ACTGCAACCG
TTTGATCCTT CCTGGGAGCA CTGGTGGCAT ACCCCAGAAG GTTGTGTGCG CTGAATGTGG ACGCCAAATG GAGAAATACT
TCATGTATCG TTGCTGTGTT GAGTAA

>Vigan.02G232600.01
MSSRQLTATP KMSQRKERRM FSTSDDSAMT KQVQTTHAPD GREIDVKPIL QIVDEILLRF IARTVEGYEV KRDQDALEMT
AALAEFDMLD SLAYIINKIS CELSCKCSGG GDAHSSTMVL LGYMSSYAWH AKVVLTLAAF AVIFGEFWLV AQLSAENTLA
KSVALLKQLP DIAENFMSLK PHFEALIRLV KAAMDVTTCI VEFKELPSDY ISEDTPPMSV ASTHIPIASY WVIRSIVACA
SQIASLIGTR NESISSTTEA WELSSLAHKV TSIHEHLKSQ LVLCYQYIDD KRHIEAFHNL IRLFETVHID NMKIVRALIY
AKDDILPLLD GTTKSRVSLE VLRRKHVLLL ISDLDLSQEE ILVLDNLYKD ARARGDTHYE MVWIPVVDKG IWNEVNKQKF
EYLQSLMPWY SVCDPFIIEP SAVKYIKEVW NFSKTAILVA LDPQGRLSSP NAVHMIWIWG NLAFPFTSEK EESLWKQEIW
SLELLVDGID PTVLEWMAEG KLVCLYGGED LEWIEKFTAT ALSVAKAGKF QLEMAYVGKS NAKERMQKMI KAFTTRKFSY
FWPNVTSIWF FWTRLESMLY SKLQHERTVE NDEIMSEVMT VLSFDGSDRG WAIFCMGATD MARAKGDSFL ICLQDFEKWG
PRIEEDGVVK AMNDYLNQNK PPHHCNRLIL PGSTGGIPQK VVCAECGRQM EKYFMYRCCV E*