GBrowse Details

Vigan.02G237800.01

Basic Information:
Name: Vigan.02G237800.01
Multiple alignment
Variant Information
Position: Chr02:33090922..33096143 (+ strand)
Length: 5222
Functional Information:
Description: Similar to Uncharacterized protein. [I1JXA2, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.20,3.13,7.12,13.88,1.32,0.16,9.12
Automatic updates:
Name: NM_001255369 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max retinol dehydrogenase 14-like (LOC100801384), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:33090922..33090993 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr02:33090994..33091123 (+ strand)
Length: 130
Type: CDS
Position: Chr02:33093720..33093951 (+ strand)
Length: 232
Type: CDS
Position: Chr02:33094085..33094164 (+ strand)
Length: 80
Type: CDS
Position: Chr02:33094729..33094882 (+ strand)
Length: 154
Type: CDS
Position: Chr02:33094975..33095053 (+ strand)
Length: 79
Type: CDS
Position: Chr02:33095170..33095257 (+ strand)
Length: 88
Type: CDS
Position: Chr02:33095339..33095385 (+ strand)
Length: 47
Type: CDS
Position: Chr02:33095605..33095787 (+ strand)
Length: 183
Type: CDS
Position: Chr02:33095788..33096143 (+ strand)
Length: 356
Type: three_prime_UTR


>Vigan.02G237800.01
AAAAGTAGCT GCATGTGTTA GCAGTCTGAG CTTGAAGTGT TATTTGTTTC TGCAACACTC TAAAGCAAAC ACATGAAGGC
AACTCTAAGA TACTTAGCAG GAATGGCAGG CCCTAGTGGT TTTGGCTCAA ACTCAACCGC TGAACAAGTC ACTGAAGATT
CTTCTTGCTT CCTTCCTTCA TCTCTAACAG CTCTCATCAC TGGGGCAAGT TCTGGTATTG GAGCTGAAAC AGCTAGAGTG
TTAGTAAAGA GAGGAGTGAG AGTTGTAATC GGTGCAAGGG ACTTGAAGAA GGCCATGGAA GTGAAAAAGA GCATACAAAA
GGAGAGGCCA AAGGCTGAGG TTGTTCTGTT GGAGATTGAT CTTAGCTCTT TTGGTTCTGT ACAGAGATTT TGTTCCGAGT
TCTTAGCTTT AGAACTTCCC CTTAATATTC TCATAAACAA TGCAGGGATA TTTTCTCAAA ACTTGGAGTT CTCTGAGGAT
AAAATTGAGA CCACATTTGC TACAAATTAC TTAGGTCATT TTTTGTTAAC AGAGATTTTA TTAGAAAAAA TGATAGAGAC
GGCTGAGAAG ACAGGTATTG AAGGAAGAAT AATAAACGTT TCTTCTGTCA TACATAGCTG GGTGAAGAAA GATGCTTTTC
GTTTCAACGA CATACTCAGT GGAAAAAAAT ATAATGGCAC ACGCGCTTAT GCTCAGTCAA AATTGGCAAA TATTTTGCAT
GCCAAGGAAA TAGCCAAGCA ACTCAAGGCA AGGAATGCAA GAGTAACTAT CAATGCAGCA CATCCAGGCA TTGTGAAGAC
AGGAATTATT AGAGCTCACA AGGGCTTATT AACGGATTCC CTATTTTTTA TCGCATCAAA GTTACTCAAA ACAACATCGC
AGGGTGCAGC AACTACATGC TATGTCGCTC TGAGCTCAAA AACAGAAGGG ATAAGTGGAA AATACTTTGC AGATTGTAAC
GAGAGTAAAT GCTCGAGCCT AGCAAATGAC GAGTCGGAAG CACAAAAGCT ATGGAACAAC ACCCATGCCT TTCTTCACAA
ACGACTACGT CAAGCAACAA TTTGAAGCAA TTCCCTTTTC AAGACACCAT GTATATTAGG ATATTCGTTT ACCTTAGCCA
GCATGCACAA GCAAGATTTG AGGCTTTAAA GGCAACCTGA AACATCATAA TCATGAGGCA CTATTGTTAG TAGCCTTTCC
TGTGTAGCTC CCTTTTGATT ATTTGTACAA ATAAGAGAGA AATAAAACAT AAATCTCTCT GCAAATGCAA TAACAAAGCG
ATAGTTCATC TCCTCTATAA AGCAAATAGA GCCAAGGCTG CTTCACATTA ATAATCAGGT ACTATCCAAA TCTAACTCTG
GAAGGAAAAC TGTGATATCC GTTGTTGATA AAAAAAACAA ACATTTATAC GACTATTCAA G

>Vigan.02G237800.01
ATGAAGGCAA CTCTAAGATA CTTAGCAGGA ATGGCAGGCC CTAGTGGTTT TGGCTCAAAC TCAACCGCTG AACAAGTCAC
TGAAGATTCT TCTTGCTTCC TTCCTTCATC TCTAACAGCT CTCATCACTG GGGCAAGTTC TGGTATTGGA GCTGAAACAG
CTAGAGTGTT AGTAAAGAGA GGAGTGAGAG TTGTAATCGG TGCAAGGGAC TTGAAGAAGG CCATGGAAGT GAAAAAGAGC
ATACAAAAGG AGAGGCCAAA GGCTGAGGTT GTTCTGTTGG AGATTGATCT TAGCTCTTTT GGTTCTGTAC AGAGATTTTG
TTCCGAGTTC TTAGCTTTAG AACTTCCCCT TAATATTCTC ATAAACAATG CAGGGATATT TTCTCAAAAC TTGGAGTTCT
CTGAGGATAA AATTGAGACC ACATTTGCTA CAAATTACTT AGGTCATTTT TTGTTAACAG AGATTTTATT AGAAAAAATG
ATAGAGACGG CTGAGAAGAC AGGTATTGAA GGAAGAATAA TAAACGTTTC TTCTGTCATA CATAGCTGGG TGAAGAAAGA
TGCTTTTCGT TTCAACGACA TACTCAGTGG AAAAAAATAT AATGGCACAC GCGCTTATGC TCAGTCAAAA TTGGCAAATA
TTTTGCATGC CAAGGAAATA GCCAAGCAAC TCAAGGCAAG GAATGCAAGA GTAACTATCA ATGCAGCACA TCCAGGCATT
GTGAAGACAG GAATTATTAG AGCTCACAAG GGCTTATTAA CGGATTCCCT ATTTTTTATC GCATCAAAGT TACTCAAAAC
AACATCGCAG GGTGCAGCAA CTACATGCTA TGTCGCTCTG AGCTCAAAAA CAGAAGGGAT AAGTGGAAAA TACTTTGCAG
ATTGTAACGA GAGTAAATGC TCGAGCCTAG CAAATGACGA GTCGGAAGCA CAAAAGCTAT GGAACAACAC CCATGCCTTT
CTTCACAAAC GACTACGTCA AGCAACAATT TGA

>Vigan.02G237800.01
MKATLRYLAG MAGPSGFGSN STAEQVTEDS SCFLPSSLTA LITGASSGIG AETARVLVKR GVRVVIGARD LKKAMEVKKS
IQKERPKAEV VLLEIDLSSF GSVQRFCSEF LALELPLNIL INNAGIFSQN LEFSEDKIET TFATNYLGHF LLTEILLEKM
IETAEKTGIE GRIINVSSVI HSWVKKDAFR FNDILSGKKY NGTRAYAQSK LANILHAKEI AKQLKARNAR VTINAAHPGI
VKTGIIRAHK GLLTDSLFFI ASKLLKTTSQ GAATTCYVAL SSKTEGISGK YFADCNESKC SSLANDESEA QKLWNNTHAF
LHKRLRQATI *