GBrowse Details

Vigan.02G238800.01

Basic Information:
Name: Vigan.02G238800.01
Multiple alignment
Variant Information
Position: Chr02:33212315..33217208 (+ strand)
Length: 4894
Functional Information:
Description: Similar to uncharacterized LOC101208061. [XP_004155083.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.47,5.07,9.67,13.40,11.25,7.02,8.14,6.95
Arabidopsis thaliana homolog: AT5G63040.1
Automatic updates:
Name: NM_001254239 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100803499 (LOC100803499), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:33212315..33212521 (+ strand)
Length: 207
Type: five_prime_UTR
Position: Chr02:33212522..33212608 (+ strand)
Length: 87
Type: CDS
Position: Chr02:33214166..33214232 (+ strand)
Length: 67
Type: CDS
Position: Chr02:33214936..33215328 (+ strand)
Length: 393
Type: CDS
Position: Chr02:33215973..33216316 (+ strand)
Length: 344
Type: CDS
Position: Chr02:33216581..33216796 (+ strand)
Length: 216
Type: CDS
Position: Chr02:33216797..33217208 (+ strand)
Length: 412
Type: three_prime_UTR


>Vigan.02G238800.01
ATAAGCCAAA GGGTTCGGTT CAATCTTACA CCTAGAAATC TACGGCTGAG GGAAGTGGCG CTCGTTGTAT GACTCATACT
CTGTTTTGCG TTCCACTTTG TGTTCTTAGC ATTTCTCGAA TCTTTATTTA TTCAAGTTAA GATGGTTGGG TGATCCAACG
CGACCCTCTT TGACCCTTTT CGTTGCTTCC TTCATTCGCA TGTTATCATG GCAAATGCCA AGTTCGGTTC TTCCTTTTCT
TGTTCCGCGG CTTCTCTTTC TTCTTCTCCT TTACAACGCA CGAGAAGTGC TCAGTTGAGC TTATCACAAG GGTTGTTTGT
CAACCAGCTA ACTGGTGCTC AGCTGCAAAT GTACACTAAA GACAAATCAT GCCAGCTTAA GTTTATGCAC GGAATGCTGA
ACTTTAAGGG AAGGTTACAG AAACAGCATA ATGCTCTTTT TGTTGTCTCT GAAGATCGTG AGCTTGAAAC AACTACTTTA
GTGCCAGAAA ACAATGATAT TGTTGTAGAA GGCATCTCTC CTGCAAGCAA CTTGTATTTT CATTTATCAG GGAGTGATGG
AAAGTCAGGT TTAATATCAT TTTATAACCG GCCTTACAGA AGAAATAGTA AGATACTTTT ATCAAATTCA GAGAGAAGTC
AAAACAGCAT ATTGTGGTTT CTGGGCCCTG CAGTCCTTGT TGCTTCCTTC ATTTTTCCCT CACTCTATTT ACGCAAAGTG
CTTTCCATCA TTTTTGAGGA CTCTTTGTTA ACAGATTTCC TCATCTTATT CTTCACAGAG GCAATTTTCT ACTGTGGTGT
TGCGGTATTC CTTTTCCTAC TGGACCATTT AAGAAGACCC ATGGTACTGG ATACTGCTAC AATCAATAGT GATACACCAC
CCCCACAGTT GGGACAAAGA GTCTCTTCTG TTGCTACTCT TGTGCTTAGT CTAGTAATTC CAATGGTAAC TATGGGTTTT
GTCTGGCCAT GGACTGGCCC TGCAGCCTCT GCAACTCTCG CTCCATACCT TGTTGGTATA GTTGTCCAAT TTGCATTTGA
GCAGTATGCC AGATATAGAA AGTCACCGTC ACGGTCTGCC ATTCCATTAA TCTTTCAAGT GTACAGGCTT CACCAACTAA
ATAGAGCAGC ACAACTGGTG ACAGCTTTAT CATTTACAGT CAGAGGAGCT GAAATGACCT CACACAACAT GGCTATAAAC
AGCTCTTTGG GTACCCTTCT AAATGTCCTA CAATTCCTTG GTGTGATTTG CATTTGGTCC CTGTCTAGCT TCCTCATGAG
ATTTATCCCT TATGCTTCAA CAACTATGCA GTAAAGAATC TCTTGTAAAG TTTCTTAAAT GTCATCTCAT GCATCAAAAC
ACGCCCCAGT TCATCTTCGT GCAGAATATG TCGATGCAGT TGGGTTTATT TTTTGGTGGT GTAAAACTGT TCAGTCTAAT
TGAAAATTTG GACACTGATC CTCTGACTCG TCTAGAATAA AAAATGGTTA CAGGAATTTG TAATTGAGGA TTTTGATACA
GATGAAGCAG AGGAATTGTC ATAGCTCTAC TTGCAGTAAA TTTTGGAACG AAGTATTTCT AGTAGAAAAA TGTTAACTGC
ACAAAGTGAA GAAAAAATTG GTAATTGCAG TAAATTATAC AGAGAAGGGT GCATTTGACC TGGTATAGAT AATTTGGTAA
ATCTATTAAT GTATAAAATA CCATTTATTT TGGTATGTGT TGAGTA

>Vigan.02G238800.01
ATGGCAAATG CCAAGTTCGG TTCTTCCTTT TCTTGTTCCG CGGCTTCTCT TTCTTCTTCT CCTTTACAAC GCACGAGAAG
TGCTCAGTTG AGCTTATCAC AAGGGTTGTT TGTCAACCAG CTAACTGGTG CTCAGCTGCA AATGTACACT AAAGACAAAT
CATGCCAGCT TAAGTTTATG CACGGAATGC TGAACTTTAA GGGAAGGTTA CAGAAACAGC ATAATGCTCT TTTTGTTGTC
TCTGAAGATC GTGAGCTTGA AACAACTACT TTAGTGCCAG AAAACAATGA TATTGTTGTA GAAGGCATCT CTCCTGCAAG
CAACTTGTAT TTTCATTTAT CAGGGAGTGA TGGAAAGTCA GGTTTAATAT CATTTTATAA CCGGCCTTAC AGAAGAAATA
GTAAGATACT TTTATCAAAT TCAGAGAGAA GTCAAAACAG CATATTGTGG TTTCTGGGCC CTGCAGTCCT TGTTGCTTCC
TTCATTTTTC CCTCACTCTA TTTACGCAAA GTGCTTTCCA TCATTTTTGA GGACTCTTTG TTAACAGATT TCCTCATCTT
ATTCTTCACA GAGGCAATTT TCTACTGTGG TGTTGCGGTA TTCCTTTTCC TACTGGACCA TTTAAGAAGA CCCATGGTAC
TGGATACTGC TACAATCAAT AGTGATACAC CACCCCCACA GTTGGGACAA AGAGTCTCTT CTGTTGCTAC TCTTGTGCTT
AGTCTAGTAA TTCCAATGGT AACTATGGGT TTTGTCTGGC CATGGACTGG CCCTGCAGCC TCTGCAACTC TCGCTCCATA
CCTTGTTGGT ATAGTTGTCC AATTTGCATT TGAGCAGTAT GCCAGATATA GAAAGTCACC GTCACGGTCT GCCATTCCAT
TAATCTTTCA AGTGTACAGG CTTCACCAAC TAAATAGAGC AGCACAACTG GTGACAGCTT TATCATTTAC AGTCAGAGGA
GCTGAAATGA CCTCACACAA CATGGCTATA AACAGCTCTT TGGGTACCCT TCTAAATGTC CTACAATTCC TTGGTGTGAT
TTGCATTTGG TCCCTGTCTA GCTTCCTCAT GAGATTTATC CCTTATGCTT CAACAACTAT GCAGTAA

>Vigan.02G238800.01
MANAKFGSSF SCSAASLSSS PLQRTRSAQL SLSQGLFVNQ LTGAQLQMYT KDKSCQLKFM HGMLNFKGRL QKQHNALFVV
SEDRELETTT LVPENNDIVV EGISPASNLY FHLSGSDGKS GLISFYNRPY RRNSKILLSN SERSQNSILW FLGPAVLVAS
FIFPSLYLRK VLSIIFEDSL LTDFLILFFT EAIFYCGVAV FLFLLDHLRR PMVLDTATIN SDTPPPQLGQ RVSSVATLVL
SLVIPMVTMG FVWPWTGPAA SATLAPYLVG IVVQFAFEQY ARYRKSPSRS AIPLIFQVYR LHQLNRAAQL VTALSFTVRG
AEMTSHNMAI NSSLGTLLNV LQFLGVICIW SLSSFLMRFI PYASTTMQ*