VIGGS:GBrowse

Vigan.02G243600.01

Basic Information:

Name:	Vigan.02G243600.01 Multiple alignment Variant Information
Position:	Chr02:34167872..34170535 (- strand)
Length:	2664

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KCH6, Glycine max]
InterPro:	DSS1/SEM1 (IPR007834)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:110.36,78.39,46.73,51.61,62.01,88.24,73.55,45.04

Automatic updates:

Name:	BT145559 NCBI(nuccore)
Organism:	Medicago truncatula
Description:	Medicago truncatula clone JCVI-FLMt-21I23 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001364598 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499672 (LOC100499672), mRNA.
PubMed ID:	20075913 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:34167872..34168305 (- strand)
Length:	434
Type:	three_prime_UTR

Position:	Chr02:34168306..34168436 (- strand)
Length:	131
Type:	CDS

Position:	Chr02:34170369..34170459 (- strand)
Length:	91
Type:	CDS

Position:	Chr02:34170460..34170535 (- strand)
Length:	76
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G243600.01
GTTATTAGCG ACTGCTCTTT CTTCATCAAA TATACGCACT TAGGGTTTCG AAATAACTGC GGATTCAGGT TTATCAATGG
CAACAGAACC AAAAGCTGCC ACCGACGATG TCAAGATCGA TCTCTTCGAA GACGATGATG AATTCGAAGA GTTTGAAATC
GACGAAGAGT GGGATGACAA GGAGGAAGGG AAAGAAGTGT CTCAACAGTG GGAGGATGAT TGGGATGACG ATGATGTTAG
TGATGATTTT TCTCTTCAGT TAAGAAGGGA GTTGGAGAGT AATACTGATA AGAATTAAAC CACGTGAGAC TTGGGTGCTT
GATCACTTGG AAGGAGATCT ATGCTTTGTT AGGAAGGAAA TGTAAGAACA TACGGACATA ATTTTCTATT CTTTCCTGAC
TATCTGCTTA GAAGTTATTG AGTGTTTGTA CATTAATCAA ATTCTGCATT ATTAGGTGTA GTATGGCTTT AAAAGTTGAC
TTAAAACCTT GAATTTTTCG TTCTTATTTT CATTATGGGG TTGGGTAGGC GTGCTTTTTT ATGTGAACCA TTCTTGCTAA
TGGTGCAGTT AGTTGCACAT TTTCTTGTAG CTCCCGTGTT CGAAGTAGGA ACTAATCAAT GTAAAGCCTG AAAACATACA
CTAATCGAGG AAGCACTTTT CAGATAACTT AATTACATAC TTATCCGTTT TAGTTAAAAG AAAAATATAA AGAAAGGTAC
AATTCAGTTC AA

[show][hide][copy]CDS

>Vigan.02G243600.01
ATGGCAACAG AACCAAAAGC TGCCACCGAC GATGTCAAGA TCGATCTCTT CGAAGACGAT GATGAATTCG AAGAGTTTGA
AATCGACGAA GAGTGGGATG ACAAGGAGGA AGGGAAAGAA GTGTCTCAAC AGTGGGAGGA TGATTGGGAT GACGATGATG
TTAGTGATGA TTTTTCTCTT CAGTTAAGAA GGGAGTTGGA GAGTAATACT GATAAGAATT AA

[show][hide][copy]PROTEIN

>Vigan.02G243600.01
MATEPKAATD DVKIDLFEDD DEFEEFEIDE EWDDKEEGKE VSQQWEDDWD DDDVSDDFSL QLRRELESNT DKN*