GBrowse Details

Vigan.02G245600.01

Basic Information:
Name: Vigan.02G245600.01
Multiple alignment
Variant Information
Position: Chr02:34467236..34471831 (+ strand)
Length: 4596
Functional Information:
Description: Similar to rac-like GTP-binding protein ARAC10-like. [XP_004501950.1, Cicer arietinum]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.22,0.82,5.73,7.91,4.74,6.07,4.16,7.13
Arabidopsis thaliana homolog: AT5G62880.1
Structure :
Position: Chr02:34467236..34467511 (+ strand)
Length: 276
Type: five_prime_UTR
Position: Chr02:34467512..34467616 (+ strand)
Length: 105
Type: CDS
Position: Chr02:34467886..34467973 (+ strand)
Length: 88
Type: CDS
Position: Chr02:34468323..34468432 (+ strand)
Length: 110
Type: CDS
Position: Chr02:34468520..34468583 (+ strand)
Length: 64
Type: CDS
Position: Chr02:34469637..34469701 (+ strand)
Length: 65
Type: CDS
Position: Chr02:34469796..34469861 (+ strand)
Length: 66
Type: CDS
Position: Chr02:34470729..34470887 (+ strand)
Length: 159
Type: CDS
Position: Chr02:34470888..34471831 (+ strand)
Length: 944
Type: three_prime_UTR


>Vigan.02G245600.01
CAAAAAATTG TACCTGACTT TAAATAAAAG CACAAAAGAA AAAATAATAA AAAATTGCTT TTGCAAAGAC TAAGATTAAA
AAAGAAAAGC AATTGGCAGG TACAAGAAAG AGGGAATGAG TGAGAATCAT GTGAAGTGCC GCCACTCTTT CTCTCTCTCC
ATCAGTGGCT GGGTCAATCA AAAGCTTTAA TCTTTTACAA TCCAACAAAA CACCCACTTC TGTTTCCCTT TTGGTTAAGC
TATTCTCAGA GTTTCTTCTT CTTTGTGTTT CTTCCAATGG CTGCTATTGC CCCAAGATTC ATCAAGTGTG TGACCGTTGG
GGACGGAGCT GTAGGGAAGA CCTGCATGCT CATTTGCTAC ACCAGCAACA AATTCCCCAC GGACTATATT CCCACTGTGT
TTGACAATTT CAGTGCCAAT GTAGTTGTTG AAGGCGTAAC TGTCAATTTA GGCCTTTGGG ATACAGCTGG GCAAGAGGAT
TACAACAGGC TGAGGCCATT GAGCTACAGG GGGGCAGATG TCTTTGTCTT GGCTTTTTCT TTAGTTAGTC GAGCAAGCTA
TGAGAATGTG CTGAAGAAGT GGATCCCTGA ACTCCAGCAT TTTGCCCCTG GCATCCCATT GGTATTGGTT GGTACCAAAT
TGGATCTCCG AGAAGACAAG CACTATATGG CTGATCATCC AGGTTTGATG CCCGTGACTA CTGAGCAAGG TGAGGAACTC
CGTAAACAGA TTGGAGCAAC CTATTATATC GAGTGCAGCT CAAAAACTCA GCAGAATGTG AAGGGGGTTT TTGATGCTGC
AATAAGAATG GTGATCAAGC CTCCACAAAA GCAAAACGAG AAGAGGAAGA AAAAACCACG AGGCTGTTTC CTGTCAGTGC
ACCTTTTCTA TATTATATCT AACAGTTTTA TACATATTTT TCTGTTGGGG TAACACTTTT CCTTTGACAC CTCACTGTTT
TCATTTCAAC AATTTTATAT TATCCCTATC GAAAAGTTAC CCACTTTGAG TATTCAAATA TTTTAGTAGT TGGTTGTACT
TACCCAAAAT TTATTGTGCA TCAAGAACTG ATAAAATAGT TAATAACTGG TCAGGTTAGG TTACCAATAC TTAAGGAAAA
CAATAATGAA TAACGTGGCA ACTCGCATTA AACCACCATA GTTTATTAAA GAGAATACAC GGTGGCAATT AAAGTGTGAA
AAAAATATAT GTATATATGC ACATGATAAA ATTGTACTAT AGTTTGGCTT GTTTTGAATG TTATAATATT AGTTCCTGTG
ACTTTTGGTT ATTGGATTTA ATCTATCTCA GTGAAAATGC AGAAACGTGT TGTGTGGAAG GAACATTGTT CGTCTTAAAT
GAAAGACTAC ATTAGCATTT CATCCAAAGG TTTGATTGTA GAAATATGAA ACTTGAATTA TAATGACTTG GGTGGAGTTT
GCAGTGTTGG TACTTATATT TGGTTGTTTT GAATTTGATT TCAGGTAGGT TTTAATGTTA TGAAACAGTT GCACCATATA
AGCATGTAAA GAAAGCACAA AGAAGTTTGT TGGCTAGCTA CCATTTATTT AAATTATTTT ATTTGAATTT GATCTAGTTT
CAGTGTATAT ATATATATAT GATATGAGGT GTCATTATCT GATATTCAAA CTAAACTAGC TTTTCAAATT ATTACTAATT
AAAGCGTGCT GAATTGTTGT ATTGTTCATA ATCTCTATAT AAAAGGACTC GTTGGGTGGT TCATTATTCA GAATAGACCA
ATATCAGCAA CTATTTGAAA AACCTATGCT TTTATTGTAC TTATTTCTCA AATGATATGA CGTTTGATCC CACCATCCCT
CTCCCTTCAC CTTCTCCAAC TTTAGCTGCT CAATTGT

>Vigan.02G245600.01
ATGGCTGCTA TTGCCCCAAG ATTCATCAAG TGTGTGACCG TTGGGGACGG AGCTGTAGGG AAGACCTGCA TGCTCATTTG
CTACACCAGC AACAAATTCC CCACGGACTA TATTCCCACT GTGTTTGACA ATTTCAGTGC CAATGTAGTT GTTGAAGGCG
TAACTGTCAA TTTAGGCCTT TGGGATACAG CTGGGCAAGA GGATTACAAC AGGCTGAGGC CATTGAGCTA CAGGGGGGCA
GATGTCTTTG TCTTGGCTTT TTCTTTAGTT AGTCGAGCAA GCTATGAGAA TGTGCTGAAG AAGTGGATCC CTGAACTCCA
GCATTTTGCC CCTGGCATCC CATTGGTATT GGTTGGTACC AAATTGGATC TCCGAGAAGA CAAGCACTAT ATGGCTGATC
ATCCAGGTTT GATGCCCGTG ACTACTGAGC AAGGTGAGGA ACTCCGTAAA CAGATTGGAG CAACCTATTA TATCGAGTGC
AGCTCAAAAA CTCAGCAGAA TGTGAAGGGG GTTTTTGATG CTGCAATAAG AATGGTGATC AAGCCTCCAC AAAAGCAAAA
CGAGAAGAGG AAGAAAAAAC CACGAGGCTG TTTCCTGTCA GTGCACCTTT TCTATATTAT ATCTAACAGT TTTATACATA
TTTTTCTGTT GGGGTAA

>Vigan.02G245600.01
MAAIAPRFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSANVV VEGVTVNLGL WDTAGQEDYN RLRPLSYRGA
DVFVLAFSLV SRASYENVLK KWIPELQHFA PGIPLVLVGT KLDLREDKHY MADHPGLMPV TTEQGEELRK QIGATYYIEC
SSKTQQNVKG VFDAAIRMVI KPPQKQNEKR KKKPRGCFLS VHLFYIISNS FIHIFLLG*