GBrowse Details

Vigan.02G246100.01

Basic Information:
Name: Vigan.02G246100.01
Multiple alignment
Variant Information
Position: Chr02:34571932..34574540 (- strand)
Length: 2609
Functional Information:
Description: Similar to Uncharacterized protein. [V4TI01, Citrus clementina.]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.83,3.81,2.85,1.64,8.38,20.13,19.36,7.28
Automatic updates:
Name: NM_001248342 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500501 (LOC100500501), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251261 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LIM domain-containing protein (LOC100500444), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:34571932..34572234 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr02:34572235..34572444 (- strand)
Length: 210
Type: CDS
Position: Chr02:34572864..34572953 (- strand)
Length: 90
Type: CDS
Position: Chr02:34573090..34573130 (- strand)
Length: 41
Type: CDS
Position: Chr02:34573264..34573360 (- strand)
Length: 97
Type: CDS
Position: Chr02:34574186..34574323 (- strand)
Length: 138
Type: CDS
Position: Chr02:34574324..34574540 (- strand)
Length: 217
Type: five_prime_UTR


>Vigan.02G246100.01
TTTATGTTAT TTTTGTCTCT AGCAAGTTTG AAAATTAGGT GCATCATATG CAGGACCAAC ATTTTCAACT GCTACTCTGA
ATTTGTCTGA GTCTGAGCTG TTGATTCTAC CAACACACAA CTCTGAGTGT GAAAAGGAAA AAGTGAAAAG AAGAAATTGG
GAGAAAAAAA AAAGGTATTC TCTTCATTCA GTGAGGTTCT GAATTGTGCA ACTTGAGATG GCATCATTTG CAGGGACTAC
CCAGAAGTGC AAAGCATGTG AGAAGACAGT GTATTTGGTG GATCAGCTCA CTGCTGACAA CAAGATCTAT CACAAATCCT
GTTTCAGATG CTACCACTGC AACGGTACCC TCAAGCTGAG TAACTATTGT TCCTTTGAGG GTGTTTTATA CTGTAAGCCT
CATTTTGATC AACTCTTTAA GAAGACTGGT AGCTTGGAGA AAAGTTTTGA AGGTATTCCA AGAACTGCTA GACTTGAAAG
ATCTGCTGAT CAGGTCCAAA CCAATAGCAA GGTTTCAAAT TTATTTGCTG GAACTCAGGA AAAATGTGTT GCTTGCAAGA
AAACAGTGTA CCCAATTGAA AAGGTAGCTG TTGATGGAAC ATCTTACCAT AAGGCTTGTT TCAGGTGCAC TCATGGAGGA
TGTGTAATTA GCCCATCAAA TTATGTTGCC CATGAACACC GTCTTTATTG TAGGCACCAT CACACTCAGT TGTTCAAGCA
GAAAGGTAAC TTTAGCCAAC TCGACAAGCA AGAAAATGAT GAAGGGGTAA CCGAGAACAC AACAACAGAG TAGTAATAGC
ATGCATGCAA CTTTCAAATT ACAGTGGCAA TACAACTTTA GTTCGTGACT CTTTTTCAGG AACATATGTG CCATTGTTTC
AATCCACTTT TCTCTCTTTT TGTTTTGTAT GAGAAAAATT TTGCTAGACA AATTTTGGGG TTAATAATTG AGAAGTAATT
AGTAGTTATT TCAGCATAAT CATATGGCTG ACAAATCTGA ATTTTGCTTT GAAGGTTTAT GAAGTTTGTA CTTTTCATTC
CTGTGATAAA ATCTTGTCTG TAAATTTCCT GTTGGTCCTT GTTATTGACA TAAAAA

>Vigan.02G246100.01
ATGGCATCAT TTGCAGGGAC TACCCAGAAG TGCAAAGCAT GTGAGAAGAC AGTGTATTTG GTGGATCAGC TCACTGCTGA
CAACAAGATC TATCACAAAT CCTGTTTCAG ATGCTACCAC TGCAACGGTA CCCTCAAGCT GAGTAACTAT TGTTCCTTTG
AGGGTGTTTT ATACTGTAAG CCTCATTTTG ATCAACTCTT TAAGAAGACT GGTAGCTTGG AGAAAAGTTT TGAAGGTATT
CCAAGAACTG CTAGACTTGA AAGATCTGCT GATCAGGTCC AAACCAATAG CAAGGTTTCA AATTTATTTG CTGGAACTCA
GGAAAAATGT GTTGCTTGCA AGAAAACAGT GTACCCAATT GAAAAGGTAG CTGTTGATGG AACATCTTAC CATAAGGCTT
GTTTCAGGTG CACTCATGGA GGATGTGTAA TTAGCCCATC AAATTATGTT GCCCATGAAC ACCGTCTTTA TTGTAGGCAC
CATCACACTC AGTTGTTCAA GCAGAAAGGT AACTTTAGCC AACTCGACAA GCAAGAAAAT GATGAAGGGG TAACCGAGAA
CACAACAACA GAGTAG

>Vigan.02G246100.01
MASFAGTTQK CKACEKTVYL VDQLTADNKI YHKSCFRCYH CNGTLKLSNY CSFEGVLYCK PHFDQLFKKT GSLEKSFEGI
PRTARLERSA DQVQTNSKVS NLFAGTQEKC VACKKTVYPI EKVAVDGTSY HKACFRCTHG GCVISPSNYV AHEHRLYCRH
HHTQLFKQKG NFSQLDKQEN DEGVTENTTT E*