GBrowse Details

Vigan.02G246200.01

Basic Information:
Name: Vigan.02G246200.01
Multiple alignment
Variant Information
Position: Chr02:34590188..34593945 (+ strand)
Length: 3758
Functional Information:
Description: Similar to PBng143. [Q8W437, Vigna radiata]
InterPro: Putative thiol-disulphide oxidoreductase DCC (IPR007263)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.46,0.86,3.76,83.60,0.07,1.53,0.34,13.55
Arabidopsis thaliana homolog: AT5G50100.1
Automatic updates:
Name: NM_001317318 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata uncharacterized protein At5g50100, mitochondrial (LOC106760917), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:34590188..34590323 (+ strand)
Length: 136
Type: five_prime_UTR
Position: Chr02:34590324..34590614 (+ strand)
Length: 291
Type: CDS
Position: Chr02:34590716..34590823 (+ strand)
Length: 108
Type: CDS
Position: Chr02:34591284..34591340 (+ strand)
Length: 57
Type: CDS
Position: Chr02:34591806..34591871 (+ strand)
Length: 66
Type: CDS
Position: Chr02:34592015..34592075 (+ strand)
Length: 61
Type: CDS
Position: Chr02:34592811..34592854 (+ strand)
Length: 44
Type: CDS
Position: Chr02:34593350..34593388 (+ strand)
Length: 39
Type: CDS
Position: Chr02:34593389..34593945 (+ strand)
Length: 557
Type: three_prime_UTR


>Vigan.02G246200.01
TTATGATTAG CATGGGTGAC CCCGAGGTTG CCACGCCCTC TACGTGTTTG CGGTTAAGAA TGAAGTTTGC GTGTAGCTAT
CAACCCTTCC TCTGCCTTCT TTCTTTCAAC AACACGACCA CAAAACAAAA GCAACAATGG CTCTCCCTTT GAGAGTCGCA
ACTGCTGTTT CTGTTTCACG CAATTCAATG CCCAAAAACC CAACGTTCAT TTCACTTCCA TATTTGAACT GCACTCTCAA
ATTCCACAAC TCACCTTCTC ATAATCCACG CCCCAACGCT CTTCCCACGC GGCCTCACCA CTACATTCGA GTCATCAGCG
AGACAACTGT GGAACCTGAA ATTTCTAAGA AGAAAAAAAA TGATTCGCCA AAAGATTGGA AAATTAAAAT GCTCTATGAT
GGAGATTGTC CCCTCTGCAT GCGCGAGGTG AATATGCTAA GAGAGAGAAA TAAGAGTTAT GGCACAATCA AGTTTGTTGA
TATTGGTTCT GATGAATACT CTCCCGACGA GAATCAAAAC ATTGACTACG AAACCGCTAT GGGAAGAATT CATGCTATTC
TCTCAGATGG AACTGTGGTT ACAGATGTTG AGGCGTTTAG GAGATTATAT GAACATGTTG GTCTTGGTTG GGTTTATGCA
ATTACAAAAT ATGAACCAAT TGCTAAAATT GCTGATTCTG TATATGGTGT CTGGGCTAAA TACCGACTTC AAGTTACAGG
ACGGCAGCCT ATAGAAGAAA TATTAGAAGC TCGAAAGAAG AAGGGTGAAT TATGCAAAGA CAGCAATGCT TGCAAGATGT
AAATTTCCTT AATATCAGAT TCCAAATTGC TCTTTATGCG ATTTGTTTCC AAATTTGGTC GTCATCCTCT GAAGCAGGGT
TTTATATGAT CTCATTTACA AAAAGAAGCC AACATAGATT AGTCTCGCAA CATTTTCTGT CTGTCAGCAT ATGCAATTGA
TTAACGTTTT CAAATTTTTC TGCAATGCAT CTGGCATAGA AATAGTAGTG TAAATAAAAT ATATTTGTAT TTACCCTGTA
CTCCCCATTA AGTCTTAGCT GACTGTTCAA GATTGTACAA GTTACATGAC ACCAGCATCT GTGCTCTGGT GTACTTATCA
GTTATCACAA CAGACTTGGC GGGGACAAAT TGAGAAGTTT ATTTTGTCTA AACATACATA CATGTATATG TACACACTGA
GGGTGGAAGA TAGTGTTTTA CTGTTGGAGA TTCCCTTATC TCTGCCAGTA GAATCAATTA TATTTATCCA TATCCGTCAT
CAAAACCTTC ATAACTGGGC TGATATTTTT CTCTGGACTC CCATCTGTTT TAGTATCTTC ACTTTATTTT TTTATCTCT

>Vigan.02G246200.01
ATGGCTCTCC CTTTGAGAGT CGCAACTGCT GTTTCTGTTT CACGCAATTC AATGCCCAAA AACCCAACGT TCATTTCACT
TCCATATTTG AACTGCACTC TCAAATTCCA CAACTCACCT TCTCATAATC CACGCCCCAA CGCTCTTCCC ACGCGGCCTC
ACCACTACAT TCGAGTCATC AGCGAGACAA CTGTGGAACC TGAAATTTCT AAGAAGAAAA AAAATGATTC GCCAAAAGAT
TGGAAAATTA AAATGCTCTA TGATGGAGAT TGTCCCCTCT GCATGCGCGA GGTGAATATG CTAAGAGAGA GAAATAAGAG
TTATGGCACA ATCAAGTTTG TTGATATTGG TTCTGATGAA TACTCTCCCG ACGAGAATCA AAACATTGAC TACGAAACCG
CTATGGGAAG AATTCATGCT ATTCTCTCAG ATGGAACTGT GGTTACAGAT GTTGAGGCGT TTAGGAGATT ATATGAACAT
GTTGGTCTTG GTTGGGTTTA TGCAATTACA AAATATGAAC CAATTGCTAA AATTGCTGAT TCTGTATATG GTGTCTGGGC
TAAATACCGA CTTCAAGTTA CAGGACGGCA GCCTATAGAA GAAATATTAG AAGCTCGAAA GAAGAAGGGT GAATTATGCA
AAGACAGCAA TGCTTGCAAG ATGTAA

>Vigan.02G246200.01
MALPLRVATA VSVSRNSMPK NPTFISLPYL NCTLKFHNSP SHNPRPNALP TRPHHYIRVI SETTVEPEIS KKKKNDSPKD
WKIKMLYDGD CPLCMREVNM LRERNKSYGT IKFVDIGSDE YSPDENQNID YETAMGRIHA ILSDGTVVTD VEAFRRLYEH
VGLGWVYAIT KYEPIAKIAD SVYGVWAKYR LQVTGRQPIE EILEARKKKG ELCKDSNACK M*