GBrowse Details

Vigan.02G247300.01

Basic Information:
Name: Vigan.02G247300.01
Multiple alignment
Variant Information
Position: Chr02:34740954..34747521 (+ strand)
Length: 6568
Functional Information:
Description: Similar to Uncharacterized protein. [B0M1A6, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
InterPro: Aldehyde dehydrogenase domain (IPR015590)
Aldehyde dehydrogenase, conserved site (IPR016160)
Aldehyde/histidinol dehydrogenase (IPR016161)
Aldehyde dehydrogenase, N-terminal (IPR016162)
Aldehyde dehydrogenase, C-terminal (IPR016163)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.74,11.27,332.84,13.71,180.63,22.98,36.90,30.97
Arabidopsis thaliana homolog: AT1G74920.1, AT3G48170.1
Automatic updates:
Name: NM_001248061 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max betaine aldehyde dehydrogenase (ALDH10A2), mRNA.
PubMed ID: 28687067 NCBI(pubmed)
18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:34740954..34741076 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr02:34741077..34741185 (+ strand)
Length: 109
Type: CDS
Position: Chr02:34741332..34741474 (+ strand)
Length: 143
Type: CDS
Position: Chr02:34741864..34741944 (+ strand)
Length: 81
Type: CDS
Position: Chr02:34742036..34742184 (+ strand)
Length: 149
Type: CDS
Position: Chr02:34742336..34742428 (+ strand)
Length: 93
Type: CDS
Position: Chr02:34742509..34742632 (+ strand)
Length: 124
Type: CDS
Position: Chr02:34742748..34742813 (+ strand)
Length: 66
Type: CDS
Position: Chr02:34742991..34743057 (+ strand)
Length: 67
Type: CDS
Position: Chr02:34743243..34743319 (+ strand)
Length: 77
Type: CDS
Position: Chr02:34743536..34743649 (+ strand)
Length: 114
Type: CDS
Position: Chr02:34746070..34746147 (+ strand)
Length: 78
Type: CDS
Position: Chr02:34746236..34746387 (+ strand)
Length: 152
Type: CDS
Position: Chr02:34746493..34746553 (+ strand)
Length: 61
Type: CDS
Position: Chr02:34746645..34746751 (+ strand)
Length: 107
Type: CDS
Position: Chr02:34747017..34747107 (+ strand)
Length: 91
Type: CDS
Position: Chr02:34747108..34747521 (+ strand)
Length: 414
Type: three_prime_UTR


>Vigan.02G247300.01
CAATTTTGTG TGTCTAAGAG ATATTTAACG CTTATTATAT GTATATATAT AACATATGTT ATTGAAGAGA AGAATACATT
ACATAGCAGA GAGTGAGTGA GAAGAAAGAA AAGAAAAAGC AAAATGGCCA TCTCAGTACC CAGTAGGCAA CTATTCATTG
ATGGAGAGTG GAAAGTCCCC GTCCACAACA ACCGGATTCC GATCATCAAT CCCGCGACCG AAGACATCAT AGGCGATATC
CCTGCCGGTA CCAAGGAAGA TATTGACCTT GCTGTCGATG CTGCTAAAAG AGCCTTGTCC CGGAACAAAG GCAGAGATTG
GTCATCAGCT TCTGGTTCTG TTCGTGCTCG TTATCTTCGA GCCATCGCTT CAAAGATAAC GGAGAAAAAG GATGAACTGG
GAAAGCTTGA AGCAATCGAT AGCGGAAAAC CACTAGAGGA AGCACTGGCA GACCTGGATG ATGTTATTGC TTGTTTTAAC
TACTATGCTG AGCTTGCAGA AGGGTTGGAT GCAAAGCAAA AGGCTCCTGT ATCCCTCCCT ATGGAAACTT TCAAGAGTTA
TATTCTCAAG GAGCCCATTG GGGTTGTTGC ATTAATTACT CCATGGAACT ATCCTCTCTT AATGGCTACA TGGAAAGTTG
CTCCTGCTCT GGCTGCTGGT TGTGCTGCAA TATTGAAGCC ATCTGAATTG GCATCTGTGA CATGTTTGGA GCTGGCTGAA
ATATGCAGAG AAGTGAACCT TCCTCCAGGG GTATTAAATG TTGTTACTGG ATTAGGAAAT GATGCTGGTG CTCCTTTGGC
ATCTCATCCT GATGTAGACA AGGTTGCCTT TACTGGAAGC TCTTTAACTG GGAGCAAGAT TATGTCAGCT GCAGCACAGC
TGACCAAGCC TGTTTCTCTA GAGCTTGGTG GAAAAAGCCC AATCATTGTT TTTGAGGATG TTGACCTTGA CAAGACTGCT
GAATGGACAA TCTTTGGCTG CTTCTTTACA AATGGTCAGA TTTGCAGTGC AACATCTCGA CTTATCGTGC ATGAAAGTAT
AGCAACAGAA TTTGTGGATA AACTTGTGAA ATGGGCCAAA AACATCAAAA TTTCAGATCC CTTGGAAGAA GGCTGCAGGC
TAGGCCCTAT TGTTAGTGAA GGACAGTACA AAAAGGTATT GAATTTCATT TCAACTGCTA AGAGTGAAGG TGCAACAATT
TTGACAGGAG GGTCTCGTCC AAAGCATTTG AAAAGGGGAT ACTTTGTTGA ACCAACCATC ATCAGTGATG TGACTACCTC
AATGCAAATT TGGAGAGAAG AAGTTTTTGG ACCTGTACTC TCTGTGAAAA CATTCAGTAC CGAGGAAGAA GCTATTGAAC
TAGCAAATGA CACCCAATAC GGCTTAGGGT CTGCCGTAAT GTCAAAAGAT CTAGAAAGAT GTGAGCGTAT ATCTCAGGCT
ATTAAAGCTG GAATTGTATG GATAAATTGT GCTCAACCAA GCTTCATTCA AGCCCCATGG GGAGGCATAA AACGAAGTGG
CTTTGGTCGT GAATTAGGAG AATGGGGTCT AGAGAACTAT TTAAGTGTGA AGCAAGTGAC CAAGTACATA TCTGATGAAC
AGTGGGGCTG GTATCAGTCT CCTTCAAAGC TCTGAAGTAA TTGGAGTTCT AAAAGCTGTC ATGAAATAAG GCCTGGGCGA
CACACATATG TGATGATGAT TTATTTAGAA AGCATTGTAA TGTGTAAAAT AAAATTGTTT CATGGCTCTG TCAGTGATGG
GTTGTGTTGA TGATCTAATT GGTTTTGAAG TTTCACCTAA GTAATCTATA TTTATCTTTA ATGCAAACTT TTTATATGCA
TTAGTTAAGT TAAACTCTAA TTATTATAGA GAACAGTATT CTTTCCACAA AATTAAGTGT TCTTTCCATA AACTACAATG
CATAGTATAG GTTTAGGTTG GTAACACATT AATTACAGTT GAGATTAGCT CTGCACATTC CGCAAAAGCT AAATGGTATC
TCTCCAAGAA GCACGGCTCT TTATAACTTC ATCTAGAATA TAGCTGTTG

>Vigan.02G247300.01
ATGGCCATCT CAGTACCCAG TAGGCAACTA TTCATTGATG GAGAGTGGAA AGTCCCCGTC CACAACAACC GGATTCCGAT
CATCAATCCC GCGACCGAAG ACATCATAGG CGATATCCCT GCCGGTACCA AGGAAGATAT TGACCTTGCT GTCGATGCTG
CTAAAAGAGC CTTGTCCCGG AACAAAGGCA GAGATTGGTC ATCAGCTTCT GGTTCTGTTC GTGCTCGTTA TCTTCGAGCC
ATCGCTTCAA AGATAACGGA GAAAAAGGAT GAACTGGGAA AGCTTGAAGC AATCGATAGC GGAAAACCAC TAGAGGAAGC
ACTGGCAGAC CTGGATGATG TTATTGCTTG TTTTAACTAC TATGCTGAGC TTGCAGAAGG GTTGGATGCA AAGCAAAAGG
CTCCTGTATC CCTCCCTATG GAAACTTTCA AGAGTTATAT TCTCAAGGAG CCCATTGGGG TTGTTGCATT AATTACTCCA
TGGAACTATC CTCTCTTAAT GGCTACATGG AAAGTTGCTC CTGCTCTGGC TGCTGGTTGT GCTGCAATAT TGAAGCCATC
TGAATTGGCA TCTGTGACAT GTTTGGAGCT GGCTGAAATA TGCAGAGAAG TGAACCTTCC TCCAGGGGTA TTAAATGTTG
TTACTGGATT AGGAAATGAT GCTGGTGCTC CTTTGGCATC TCATCCTGAT GTAGACAAGG TTGCCTTTAC TGGAAGCTCT
TTAACTGGGA GCAAGATTAT GTCAGCTGCA GCACAGCTGA CCAAGCCTGT TTCTCTAGAG CTTGGTGGAA AAAGCCCAAT
CATTGTTTTT GAGGATGTTG ACCTTGACAA GACTGCTGAA TGGACAATCT TTGGCTGCTT CTTTACAAAT GGTCAGATTT
GCAGTGCAAC ATCTCGACTT ATCGTGCATG AAAGTATAGC AACAGAATTT GTGGATAAAC TTGTGAAATG GGCCAAAAAC
ATCAAAATTT CAGATCCCTT GGAAGAAGGC TGCAGGCTAG GCCCTATTGT TAGTGAAGGA CAGTACAAAA AGGTATTGAA
TTTCATTTCA ACTGCTAAGA GTGAAGGTGC AACAATTTTG ACAGGAGGGT CTCGTCCAAA GCATTTGAAA AGGGGATACT
TTGTTGAACC AACCATCATC AGTGATGTGA CTACCTCAAT GCAAATTTGG AGAGAAGAAG TTTTTGGACC TGTACTCTCT
GTGAAAACAT TCAGTACCGA GGAAGAAGCT ATTGAACTAG CAAATGACAC CCAATACGGC TTAGGGTCTG CCGTAATGTC
AAAAGATCTA GAAAGATGTG AGCGTATATC TCAGGCTATT AAAGCTGGAA TTGTATGGAT AAATTGTGCT CAACCAAGCT
TCATTCAAGC CCCATGGGGA GGCATAAAAC GAAGTGGCTT TGGTCGTGAA TTAGGAGAAT GGGGTCTAGA GAACTATTTA
AGTGTGAAGC AAGTGACCAA GTACATATCT GATGAACAGT GGGGCTGGTA TCAGTCTCCT TCAAAGCTCT GA

>Vigan.02G247300.01
MAISVPSRQL FIDGEWKVPV HNNRIPIINP ATEDIIGDIP AGTKEDIDLA VDAAKRALSR NKGRDWSSAS GSVRARYLRA
IASKITEKKD ELGKLEAIDS GKPLEEALAD LDDVIACFNY YAELAEGLDA KQKAPVSLPM ETFKSYILKE PIGVVALITP
WNYPLLMATW KVAPALAAGC AAILKPSELA SVTCLELAEI CREVNLPPGV LNVVTGLGND AGAPLASHPD VDKVAFTGSS
LTGSKIMSAA AQLTKPVSLE LGGKSPIIVF EDVDLDKTAE WTIFGCFFTN GQICSATSRL IVHESIATEF VDKLVKWAKN
IKISDPLEEG CRLGPIVSEG QYKKVLNFIS TAKSEGATIL TGGSRPKHLK RGYFVEPTII SDVTTSMQIW REEVFGPVLS
VKTFSTEEEA IELANDTQYG LGSAVMSKDL ERCERISQAI KAGIVWINCA QPSFIQAPWG GIKRSGFGRE LGEWGLENYL
SVKQVTKYIS DEQWGWYQSP SKL*