GBrowse Details

Vigan.02G258000.01

Basic Information:
Name: Vigan.02G258000.01
Multiple alignment
Variant Information
Position: Chr02:36200902..36203122 (- strand)
Length: 2221
Functional Information:
Description: Similar to uncharacterized protein. [D7SHW3, Vitis vinifera]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: mitochondrial ribosome (GO:0005761)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L29 (IPR001854)
Ribosomal protein L47, mitochondrial (IPR010729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.73,14.12,7.53,4.85,15.32,13.13,25.78,7.84
Arabidopsis thaliana homolog: AT1G07830.1
Automatic updates:
Name: NM_001254080 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 39S ribosomal protein L47, mitochondrial-like (LOC100812176), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:36200902..36201400 (- strand)
Length: 499
Type: three_prime_UTR
Position: Chr02:36201401..36201508 (- strand)
Length: 108
Type: CDS
Position: Chr02:36201710..36201867 (- strand)
Length: 158
Type: CDS
Position: Chr02:36202065..36202227 (- strand)
Length: 163
Type: CDS
Position: Chr02:36202228..36203122 (- strand)
Length: 895
Type: five_prime_UTR


>Vigan.02G258000.01
TTTTTGTATC TCTAATTTCC CTCTGTACGC TTTTGTTTAT TTGTTGTCCA CAATATTTCA TTTTTTATCA TTTTGCAATA
TATTTGATGT TGCTCACAAG CTGTTCGATA TTTGGTCTGA ATCATAGAAA AGCATTTTGC CTTCAAAATG CGATTTGGTA
GTCTAGAAAT CCTAGCATTT TTCGGTTTCT TTGCCAGATC TCGCTTGCCT ACAAATATTT TTCGTCCAGT GTAACCACAA
TTTAACCCGT ACGCGTACAT TGATATTGAT GCTGATATAG GTATATACAA TGTTCGTGTG AACTATGAAT CCAATTTAAT
GTTCAATATT TCTACTAGAA TTGCTTCATC ATATGAATAT CGCCACTCTT CGAGGGTGCA TTGTATCAGT TTATGTCTCG
AATCTTGGGA TTATGTACTA ATACAATATT GAACTTGTAC TGAAGTGGGA AACTTAGTTT ATCAACATTT TCACTTTGTT
TTAGGGTTGC CTGTGTCCTC CGTATACTAA TTTTTCATTT TTCAGTGATT TAACCTTAAT CTGTATGGTC ACTTTGGGTG
TTGGCCTTGG CCTAAGTGGG GATAGAATTG AAGGGGATTG CTGCCATATA TTGATAGCTC TGTATGACTG TAAACCCAAC
CCAACCCAGT CCTTGCATGT ATGGGTATAA GGGAAGCTAA GATTGATTTT TTAATTTCAT AGTTGCACTT TCTTCGCACT
GTCTACCTAA ATGATGGAAT TTTTCAACTG TTACTTGATC ATACTCAATG ATACATTGTC GGGAAAATCC GTGCATTTAA
GGCAATATTT TATTTGATTT TGATAACATT GTATGGCATT TTCTTGTCCT CTGGTTTCTT ACATTATAAA ATAAGTATGG
ATTGGCAATG CAGCCATGTT TTTGTCTAGA ACGCTTGGAC GAACACTCTT TGCTGCTGCT GCTAGATCAA AACGTTATGC
CACTACAGCT CCTGCTGGTG GCAGAGAAGT ACGCAATCCC CTTCAGGAGT TCTTTGAGGC AGACAGGAGC CCAGATGATG
ACAAACCTGT TGTTTATGGT CGGGGTTGGA AGGCTTCTGA ACTGCGCCTG AAATCTTGGG ACGACCTTCA TAAGTTGTGG
TATGTGCTGT TAAAGGAGAA GAACATGTTG ATGACTCAGC GTCAAATGCT TAATGCACAG AACTTCCGTT TTCCTAACCC
AGAGCGCATA CCTAAGGTGA GGAAGTCAAT GTGTCGTATC AAGCAAGTAC TTACCGAGAG AGCGATTGAA GAACCAGATC
CCAGGCGGTC TGCTGAGATG AAGAAAATGA TAAATGCTCT TTAATAACTT GAAATGGACC TATTCCTGTG ATGACATTAC
TCGGTATGTT GTTACAATAG GACATCTACA TTTGAAGATA TAAGTTTGCT AACTTGAAGC AATGTCCAAA AATATTATTT
TGAAGGAGAT TACCTTTTAA TGCTGTTTGC TGTGTTCTGT ATTAGTCAGT CTGGAGGGAA TCTAATGAAG CATTCATTAA
CTGGATAAGG TGTTAAGTGA GTTACAGCAT AATGTTTTGC TGCCTAATTT CTATTTTCCT ACTTTTAGAT GTCTCAAACA
AACAAGTGCT AGCATATTGT CCTATTAGAG GTTGTGTAAA AAGCTATTGA GGAATGCTTC TTCCTGCTCT CATGCAATAG
AAATGTTTTT TGTTTTGTTT TTCCCTTGAA AGGAACCTTT GAAGTAAATA ATTGCCGATT AGAACATGCA GCAAATTACA
CAGACCCCTC TTATGTTTTG CTGTTGAAGA GGATATTTGA CATGTTAGAA ATTTTTTTTT GAA

>Vigan.02G258000.01
ATGTTTTTGT CTAGAACGCT TGGACGAACA CTCTTTGCTG CTGCTGCTAG ATCAAAACGT TATGCCACTA CAGCTCCTGC
TGGTGGCAGA GAAGTACGCA ATCCCCTTCA GGAGTTCTTT GAGGCAGACA GGAGCCCAGA TGATGACAAA CCTGTTGTTT
ATGGTCGGGG TTGGAAGGCT TCTGAACTGC GCCTGAAATC TTGGGACGAC CTTCATAAGT TGTGGTATGT GCTGTTAAAG
GAGAAGAACA TGTTGATGAC TCAGCGTCAA ATGCTTAATG CACAGAACTT CCGTTTTCCT AACCCAGAGC GCATACCTAA
GGTGAGGAAG TCAATGTGTC GTATCAAGCA AGTACTTACC GAGAGAGCGA TTGAAGAACC AGATCCCAGG CGGTCTGCTG
AGATGAAGAA AATGATAAAT GCTCTTTAA

>Vigan.02G258000.01
MFLSRTLGRT LFAAAARSKR YATTAPAGGR EVRNPLQEFF EADRSPDDDK PVVYGRGWKA SELRLKSWDD LHKLWYVLLK
EKNMLMTQRQ MLNAQNFRFP NPERIPKVRK SMCRIKQVLT ERAIEEPDPR RSAEMKKMIN AL*