GBrowse Details

Vigan.02G258400.01

Basic Information:
Name: Vigan.02G258400.01
Multiple alignment
Variant Information
Position: Chr02:36296614..36298140 (+ strand)
Length: 1527
Functional Information:
Description: Similar to transcription factor bHLH135. [XP_003527066.1, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,7.78,0.00,0.00,0.00,0.20,16.13,0.00
Automatic updates:
Name: KT031104 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_48 bHLH transcription factor (Glyma04g34080.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031108 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_25 bHLH transcription factor (Glyma06g20400.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001248336 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bHLH transcription factor (LOC100527636), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:36296614..36297043 (+ strand)
Length: 430
Type: five_prime_UTR
Position: Chr02:36297044..36297172 (+ strand)
Length: 129
Type: CDS
Position: Chr02:36297834..36297983 (+ strand)
Length: 150
Type: CDS
Position: Chr02:36297984..36298140 (+ strand)
Length: 157
Type: three_prime_UTR


>Vigan.02G258400.01
TCTCCATTGT TCATTTTCTC TCACTTCAAA CATGCACAGG CAACTCTGAA ACTTCTAACT CCAATTTAGG AACACTCTTG
GATGATGATA TTATAGCATA TCTCTAGAAA CTTGATTCTT CTCTCTCTCC AAAACCCTAT TTAAAGATAA CCATAGACCT
CTTCTTTCTC CCATGCATTA CTTGTCTTGA TTTCATTCTC GATCCCCAAC ATCACAGGCT ATTCTACACA CTCTACAACC
CCACCTTCCT CCATTCTTTT TTTACTACTT AATTTACTTC TCCCATCTCT ATAACCATTT TCAAATTCTC AACCGCCACT
AGCTTTGTTT CATAACTGAT TGTTTTACCA ACTCACTAAA AACATATTGG TGGCTATAGG ATTCTCAAAT TAGACCTAAA
AGTTCTTGTT TTATTTATAT ATTATATAAG ATGTCTAGCA GAAGGTCACG GTCAAGGCAA ACAGGTACTT CAAGGAATAT
CACCGATGAT CAGATCAACG ATCTTGTCTC CAAGTTGCAA CAGCTTCTTC CAGAGATACG TGAGAGGCGC TCTGACAAGG
TTTCAGCTTC GAAGGTGTTG CAAGAGACAT GCAACTATAT TAAAAGCTTA CACAGGGAAG TGGACGACCT AAGCGAGCGT
TTGTCTGAAC TCTTGGCTAC AACTGACACT GCACAAGCTG CTATAATTAG AAATTTACTT ATGCAATAGA TCAGTACGTA
GTAGTTTATC CCATAATTCA TAGTTAGCAC TTCACTGCTT CTCAGCGGAT CCAGTAGTCG TGTATTTCTT ATTCTCTTTT
CTGTTTATCT CTTTTTTTTG CCATGGTTTT TGTTCACTAA TATGTATGAT TACTTCTTCT GCAAAG

>Vigan.02G258400.01
ATGTCTAGCA GAAGGTCACG GTCAAGGCAA ACAGGTACTT CAAGGAATAT CACCGATGAT CAGATCAACG ATCTTGTCTC
CAAGTTGCAA CAGCTTCTTC CAGAGATACG TGAGAGGCGC TCTGACAAGG TTTCAGCTTC GAAGGTGTTG CAAGAGACAT
GCAACTATAT TAAAAGCTTA CACAGGGAAG TGGACGACCT AAGCGAGCGT TTGTCTGAAC TCTTGGCTAC AACTGACACT
GCACAAGCTG CTATAATTAG AAATTTACTT ATGCAATAG

>Vigan.02G258400.01
MSSRRSRSRQ TGTSRNITDD QINDLVSKLQ QLLPEIRERR SDKVSASKVL QETCNYIKSL HREVDDLSER LSELLATTDT
AQAAIIRNLL MQ*