GBrowse Details

Vigan.02G260600.01

Basic Information:
Name: Vigan.02G260600.01
Multiple alignment
Variant Information
Position: Chr02:36599350..36605445 (- strand)
Length: 6096
Functional Information:
Description: Similar to ATP synthase subunit gamma. [I1KD11, Glycine max]
GO: Biological Process: ATP synthesis coupled proton transport (GO:0015986)
Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261)
Molecular Function: proton-transporting ATP synthase activity, rotational mechanism (GO:0046933)
Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961)
InterPro: ATPase, F1 complex, gamma subunit (IPR000131)
ATPase, F1 complex, gamma subunit domain (IPR023633)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:86.14,53.89,104.22,52.05,156.15,115.23,111.71,56.66
Arabidopsis thaliana homolog: AT2G33040.1
Automatic updates:
Name: NM_001414683 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP synthase subunit gamma, mitochondrial-like (LOC100790402), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:36599350..36600000 (- strand)
Length: 651
Type: three_prime_UTR
Position: Chr02:36600001..36600201 (- strand)
Length: 201
Type: CDS
Position: Chr02:36601180..36601299 (- strand)
Length: 120
Type: CDS
Position: Chr02:36601477..36601599 (- strand)
Length: 123
Type: CDS
Position: Chr02:36602921..36603048 (- strand)
Length: 128
Type: CDS
Position: Chr02:36604184..36604297 (- strand)
Length: 114
Type: CDS
Position: Chr02:36604699..36604851 (- strand)
Length: 153
Type: CDS
Position: Chr02:36604999..36605042 (- strand)
Length: 44
Type: CDS
Position: Chr02:36605167..36605249 (- strand)
Length: 83
Type: CDS
Position: Chr02:36605250..36605445 (- strand)
Length: 196
Type: five_prime_UTR


>Vigan.02G260600.01
TTTTCCTAGT AAAGCAGTAA CAAACCTACG GGGAATAGAA ATGTGCGTGG GGCATGTGAT ACATAACGCA GCATCCATAC
ATATGAGACC ATATTGAACA GTGTTGGCAT TGTTCCTGAA CGAAAACAAA TAGGGGCTTC TTCAGTTGTC TGTGTGTAAC
ACCGCTAGGG TTTCGCAAGA GCGATCACAA ACGAAGATGG CAATGGCTGC TGTTCTGCGT CGCGAAGGGA GGCGTTTGAC
CCAACCAATC AACGCTCTCC ATTCCTCTCT CATCTCTCAA GACCAAGCTC CTCATGGTTC GCGCTCCGTT TCCACCCAAG
TAGTGAGGAA CCGAATGAAG AGTGTGAAGA ATATCCAGAA AATCACCAAG GCCATGAAGA TGGTTGCCGC ATCCAAGCTT
CGAGCCGTTC AAACAAGAGC TGAAAATTCC CGTGGCCTCT GGCAACCATT CACTGCCCTT CTCGGTGACA ATCCAAGTGC
TGATGTTAAG AAGAATGTTG TTGTTACCGT TTCCTCGGAC AAAGGTCTTT GTGGTGGAAT CAATTCCACA TCTGTCAAGA
TAAGCAGGGT TTTGCACAAA TTGAATTCCG GGCCTGATAA AGAGACAAAA TATGTCATAC TGGGAGAGAA GGCTAAGGCT
CAATTGTTAC GTGACTCAAA GAAAAATATC GAGCTCTCCC TTACTGAATT GCAGAAGAAT CCTCTGAATT ATACTCAGGT
GTCTGTCTTG GCAGATGACA TTCTAAAGAA TGTGGAGTAT GATGCATTAA GGATTGTTTT CAACAAATTT CATTCTGTTG
TTTCATTTTT GCCAACAGTG TCAACTATAC TATCTCCTGA GGTTATCGAG AGAGAGGCTG AATCAGGAGG AAAGCTTGGG
GAACTAGATT CATATGAGAT TGAAGGTGGC GAGACAAAAT CTGAAATTCT TCAGAATCTG GCTGAGTTCC AGTTTTCTTG
TGTCATGTAC AATGCGGTGT TGGAGAATGC TTGCAGTGAG CAAGGAGCAA GAATGTCAGC CATGGACAGC TCTAGTAGGA
ACGCTGGGGA CATGCTTGAT CGTCTCACCC TCACTTATAA CAGGTCTCTT TTTCTTTCTC TTCTACATGC CTGTTTAATC
GTTTTCAACA TTCAATTCTT TAGTGGGAAA TATATAAAAT GATGGGTAGG AACTCGTAAG TCTAAACAGT ATTGGTGATT
GGAAGAGAGA GAAACTAAGT ATTTATATGT CTTTGAAGTT AAGAGGGTTT CATTTCATGT ATCATTATTA CTATTCCTTG
GATCTGGGCT ATCCAATATG ATTCCATTAT TATCTGCCAA TACAGTTTTG CACTTTTTGT TTTGACTGAC TGGTCTCTGT
TAATTTTGTG GCAGAACTCG TCAAGCATCT ATCACCACAG AATTGACAGA GATTATCTCT GGAGCTTCAG CACTGGAAGG
TTAATTTGTG GGGAGCAATC TGTAATATAC TCAACAGTGG CGATATCAAG TTAATATCGT TGGTGCCACA TTTTTTTAGT
CTCTCACTCC TTCGACTTCT GTAATAAGTT TTCCATGGCG GGATCCATTT TCAGGATTCC CTGGTTGAGA CTATATTTCT
GGAATTGTGT TTTTTATGTT AAGATAGAGT CTGTCTTTTT TTAACTCGAA ATGCATTATC ATAAGATTTT TTCCCATTCT
AATAATGTCG TTTCTCATAC CCCAACATTG TGAAACAGTT GGACAACTGT GTTTTATTAA AGCGGTATGC TAGTTGGTGT
TATTCCCGTA GGATTAAGTG AGATAAAATT ATTTATAACA TTTTTTTATG GAA

>Vigan.02G260600.01
ATGGCAATGG CTGCTGTTCT GCGTCGCGAA GGGAGGCGTT TGACCCAACC AATCAACGCT CTCCATTCCT CTCTCATCTC
TCAAGACCAA GCTCCTCATG GTTCGCGCTC CGTTTCCACC CAAGTAGTGA GGAACCGAAT GAAGAGTGTG AAGAATATCC
AGAAAATCAC CAAGGCCATG AAGATGGTTG CCGCATCCAA GCTTCGAGCC GTTCAAACAA GAGCTGAAAA TTCCCGTGGC
CTCTGGCAAC CATTCACTGC CCTTCTCGGT GACAATCCAA GTGCTGATGT TAAGAAGAAT GTTGTTGTTA CCGTTTCCTC
GGACAAAGGT CTTTGTGGTG GAATCAATTC CACATCTGTC AAGATAAGCA GGGTTTTGCA CAAATTGAAT TCCGGGCCTG
ATAAAGAGAC AAAATATGTC ATACTGGGAG AGAAGGCTAA GGCTCAATTG TTACGTGACT CAAAGAAAAA TATCGAGCTC
TCCCTTACTG AATTGCAGAA GAATCCTCTG AATTATACTC AGGTGTCTGT CTTGGCAGAT GACATTCTAA AGAATGTGGA
GTATGATGCA TTAAGGATTG TTTTCAACAA ATTTCATTCT GTTGTTTCAT TTTTGCCAAC AGTGTCAACT ATACTATCTC
CTGAGGTTAT CGAGAGAGAG GCTGAATCAG GAGGAAAGCT TGGGGAACTA GATTCATATG AGATTGAAGG TGGCGAGACA
AAATCTGAAA TTCTTCAGAA TCTGGCTGAG TTCCAGTTTT CTTGTGTCAT GTACAATGCG GTGTTGGAGA ATGCTTGCAG
TGAGCAAGGA GCAAGAATGT CAGCCATGGA CAGCTCTAGT AGGAACGCTG GGGACATGCT TGATCGTCTC ACCCTCACTT
ATAACAGGTC TCTTTTTCTT TCTCTTCTAC ATGCCTGTTT AATCGTTTTC AACATTCAAT TCTTTAGTGG GAAATATATA
AAATGA

>Vigan.02G260600.01
MAMAAVLRRE GRRLTQPINA LHSSLISQDQ APHGSRSVST QVVRNRMKSV KNIQKITKAM KMVAASKLRA VQTRAENSRG
LWQPFTALLG DNPSADVKKN VVVTVSSDKG LCGGINSTSV KISRVLHKLN SGPDKETKYV ILGEKAKAQL LRDSKKNIEL
SLTELQKNPL NYTQVSVLAD DILKNVEYDA LRIVFNKFHS VVSFLPTVST ILSPEVIERE AESGGKLGEL DSYEIEGGET
KSEILQNLAE FQFSCVMYNA VLENACSEQG ARMSAMDSSS RNAGDMLDRL TLTYNRSLFL SLLHACLIVF NIQFFSGKYI
K*