VIGGS:GBrowse

Vigan.02G261700.01

Basic Information:

Name:	Vigan.02G261700.01 Multiple alignment Variant Information
Position:	Chr02:36744012..36748324 (- strand)
Length:	4313

Functional Information:

Description:	Similar to Uncharacterized protein. [Q8W3Y5, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Cytochrome P450 (IPR001128)
	Cytochrome P450, E-class, group I (IPR002401)
	Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.69,2.41,16.45,1.98,0.75,23.85,0.76,1.11
Arabidopsis thaliana homolog:	AT5G07990.1

Automatic updates:

Name:	NM_001250086 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max flavonoid 3'-hydroxylase (SF3'H1), mRNA.
PubMed ID:	22258749 NCBI(pubmed)
	18423787 NCBI(pubmed)
	19055742 NCBI(pubmed)
	17764520 NCBI(pubmed)
	12586717 NCBI(pubmed)
	12175012 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:36744012..36744205 (- strand)
Length:	194
Type:	three_prime_UTR

Position:	Chr02:36744206..36744853 (- strand)
Length:	648
Type:	CDS

Position:	Chr02:36744949..36745380 (- strand)
Length:	432
Type:	CDS

Position:	Chr02:36747738..36748184 (- strand)
Length:	447
Type:	CDS

Position:	Chr02:36748185..36748324 (- strand)
Length:	140
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G261700.01
AAAAAACGGT GAGAGAAAAA AAAAATATTT TGCTATATAT ATACCACCTA GTTTGAGCCA AACTGAAGAA AAACCCCAAC
AGACTACTTC TTCTACTACA GTTTCATTTC AAAATAGTAA CAACTGTTCC AAAACTAACC ATGTCTCCGT TCATGGTTGT
CTTCGCAACA ATCGCAGCAG CGATCCTCCT ATGTCGTTTA ATAAACTTCT TAAAGCGTTC TTCTTCTCTG CCACTCCCTC
CAGGCCCAAA ACCCTGGCCC GTTCTCGGGA ATTTCCCACA CATGGGCCCA GTGCCTCACC ACTCCCTCGC CGCCTTGGCC
CGCGTTCACG GCCCGTTGAT GCACCTGCGT CTCGGATTCG TCGACGTCGT CGTGGCGGCG TCCGCGTCGG TAGCCGAACA
GTTTTTGAAG ATTCATGACT CTAATTTCAG CAGCCGGCCA CCGAACGCCG GAGCCAAATA CATAGCCTAT AACTACCAGG
ACCTGGTGTT CGCCCCCTAT GGCCCGCGGT GGCGGTTGCT CCGGAAACTC ACCTCCGTTC ACCTCTTCTC CGGGAAGGCC
CTGGATGTAT TTAGACACTT GCGTGAGGAA GAGGTGGGAA GACTTACACG TAACCTGGGG AGTTCAGAGG GAAAAGCAGT
GAATTTGGGG CAAGTGTTGA ACGTGTGCAC CACGAACGCA TTGGCGAGGG TGATGATCGG ACGGCGAGTG TTCGACGACG
GGAACGGCGG CTGCGATCCT AGGGCTGACG AGTTCAAGAA CATGGTGGTG GAGGTGATGG TGTTGGCCGG CGTTTTCAAC
ATCGGCGACT TTATTCCGTC GCTCGAGTGG CTTGATCTTC AAGGAGTGCA AGCTAAGATG AAGAAATTGC ATCAAAGATT
TGATGCATTT TTGAGCACCA TTATTGAAGA ACACGATTCT TCTTCCAACA ATCTCTTGAG TATCTTGTTG TCTCTTCAAG
ATGCGAAGGA CGATGACGGA AACCATCTTA CTCACACAGA GATCAAAGCA TTGCTGCTGA ATATGTTTAC GGCTGGAACC
GACACGTCAT CGAGCACAAC AGAATGGGCC ATCGCCGAAC TGATCCGAAA TCCAAGAGTC CTGACCCAAG TCCAGCAAGA
GTTGGACTCT GTTGTGGGCC GAGACAGGAG CGTGAAAGAG GAGGACTTGG CCCATCTCCC GTACTTACAA GCTGTGATTA
AGGAAACCTT CAGGCTCCAC CCATCAACCC CTCTTTCTCT GCCACGTGTC GCTGCCGAGA GCTGCGAGAT ATTTGGGTAC
CACATTCCTA AGGGTTCGAC TCTCTTGGTG AATGTTTGGG CCATAGCCCG TGACCCGAAG GAATGGGCCG ATCCGTTGGA
GTTCAGGCCC GAAAGGTTCC TTCCCGGCGG TGAGAAGGCT GATGTTGACG TTAAGGGCAA TGACTTTGAG GTTATACCAT
TCGGTGCTGG GCGAAGGATT TGCGCTGGGC TCAGCCTTGG GCTTCGAATG GTCCAACTTC TAACTGCAAC CTTGGCCCAT
TCTTTTGATT GGGAACTGGA AAATGGGCTG AACCCAGAAA AGATGAACAT GGATGAAGCC TATGGGCTGA CCTTACAGCG
GGCTGAGCCT CTGTCAGTGG TTCCCAGGCC CAGGCTCTCA CCACATGTTT ACTCAATGTA TTTATAATTT TTAAGCTTCT
CGCTTTCTTA ATAGTGCTTA TGTTCCTTAC TTTTTCTTAA CTTGAGTTTT AGTAACAATA AAAATATATT GGTGATATTG
TGTAATATTG TGAAAAGGGA GATGTGTCTT TTTAGTTGTA TTTAATTTCA GGGAAATTTA TCTGTATATG TTTATGATAA
TTGAATATAT GCTATATGGA G

[show][hide][copy]CDS

>Vigan.02G261700.01
ATGTCTCCGT TCATGGTTGT CTTCGCAACA ATCGCAGCAG CGATCCTCCT ATGTCGTTTA ATAAACTTCT TAAAGCGTTC
TTCTTCTCTG CCACTCCCTC CAGGCCCAAA ACCCTGGCCC GTTCTCGGGA ATTTCCCACA CATGGGCCCA GTGCCTCACC
ACTCCCTCGC CGCCTTGGCC CGCGTTCACG GCCCGTTGAT GCACCTGCGT CTCGGATTCG TCGACGTCGT CGTGGCGGCG
TCCGCGTCGG TAGCCGAACA GTTTTTGAAG ATTCATGACT CTAATTTCAG CAGCCGGCCA CCGAACGCCG GAGCCAAATA
CATAGCCTAT AACTACCAGG ACCTGGTGTT CGCCCCCTAT GGCCCGCGGT GGCGGTTGCT CCGGAAACTC ACCTCCGTTC
ACCTCTTCTC CGGGAAGGCC CTGGATGTAT TTAGACACTT GCGTGAGGAA GAGGTGGGAA GACTTACACG TAACCTGGGG
AGTTCAGAGG GAAAAGCAGT GAATTTGGGG CAAGTGTTGA ACGTGTGCAC CACGAACGCA TTGGCGAGGG TGATGATCGG
ACGGCGAGTG TTCGACGACG GGAACGGCGG CTGCGATCCT AGGGCTGACG AGTTCAAGAA CATGGTGGTG GAGGTGATGG
TGTTGGCCGG CGTTTTCAAC ATCGGCGACT TTATTCCGTC GCTCGAGTGG CTTGATCTTC AAGGAGTGCA AGCTAAGATG
AAGAAATTGC ATCAAAGATT TGATGCATTT TTGAGCACCA TTATTGAAGA ACACGATTCT TCTTCCAACA ATCTCTTGAG
TATCTTGTTG TCTCTTCAAG ATGCGAAGGA CGATGACGGA AACCATCTTA CTCACACAGA GATCAAAGCA TTGCTGCTGA
ATATGTTTAC GGCTGGAACC GACACGTCAT CGAGCACAAC AGAATGGGCC ATCGCCGAAC TGATCCGAAA TCCAAGAGTC
CTGACCCAAG TCCAGCAAGA GTTGGACTCT GTTGTGGGCC GAGACAGGAG CGTGAAAGAG GAGGACTTGG CCCATCTCCC
GTACTTACAA GCTGTGATTA AGGAAACCTT CAGGCTCCAC CCATCAACCC CTCTTTCTCT GCCACGTGTC GCTGCCGAGA
GCTGCGAGAT ATTTGGGTAC CACATTCCTA AGGGTTCGAC TCTCTTGGTG AATGTTTGGG CCATAGCCCG TGACCCGAAG
GAATGGGCCG ATCCGTTGGA GTTCAGGCCC GAAAGGTTCC TTCCCGGCGG TGAGAAGGCT GATGTTGACG TTAAGGGCAA
TGACTTTGAG GTTATACCAT TCGGTGCTGG GCGAAGGATT TGCGCTGGGC TCAGCCTTGG GCTTCGAATG GTCCAACTTC
TAACTGCAAC CTTGGCCCAT TCTTTTGATT GGGAACTGGA AAATGGGCTG AACCCAGAAA AGATGAACAT GGATGAAGCC
TATGGGCTGA CCTTACAGCG GGCTGAGCCT CTGTCAGTGG TTCCCAGGCC CAGGCTCTCA CCACATGTTT ACTCAATGTA
TTTATAA

[show][hide][copy]PROTEIN

>Vigan.02G261700.01
MSPFMVVFAT IAAAILLCRL INFLKRSSSL PLPPGPKPWP VLGNFPHMGP VPHHSLAALA RVHGPLMHLR LGFVDVVVAA
SASVAEQFLK IHDSNFSSRP PNAGAKYIAY NYQDLVFAPY GPRWRLLRKL TSVHLFSGKA LDVFRHLREE EVGRLTRNLG
SSEGKAVNLG QVLNVCTTNA LARVMIGRRV FDDGNGGCDP RADEFKNMVV EVMVLAGVFN IGDFIPSLEW LDLQGVQAKM
KKLHQRFDAF LSTIIEEHDS SSNNLLSILL SLQDAKDDDG NHLTHTEIKA LLLNMFTAGT DTSSSTTEWA IAELIRNPRV
LTQVQQELDS VVGRDRSVKE EDLAHLPYLQ AVIKETFRLH PSTPLSLPRV AAESCEIFGY HIPKGSTLLV NVWAIARDPK
EWADPLEFRP ERFLPGGEKA DVDVKGNDFE VIPFGAGRRI CAGLSLGLRM VQLLTATLAH SFDWELENGL NPEKMNMDEA
YGLTLQRAEP LSVVPRPRLS PHVYSMYL*