VIGGS:GBrowse

Vigan.02G262500.01

Basic Information:

Name:	Vigan.02G262500.01 Multiple alignment Variant Information
Position:	Chr02:36866662..36870456 (+ strand)
Length:	3795

Functional Information:

Description:	Similar to protein Asterix-like. [XP_004514029.1, Cicer arietinum]
InterPro:	Uncharacterised protein family UPF0139 (IPR005351)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:52.34,44.22,53.54,38.14,98.74,110.72,93.10,49.74
Arabidopsis thaliana homolog:	AT5G07960.1

Automatic updates:

Name:	NM_001248341 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500245 (LOC100500245), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:36866662..36866715 (+ strand)
Length:	54
Type:	five_prime_UTR

Position:	Chr02:36866716..36866856 (+ strand)
Length:	141
Type:	CDS

Position:	Chr02:36866955..36867055 (+ strand)
Length:	101
Type:	CDS

Position:	Chr02:36870189..36870252 (+ strand)
Length:	64
Type:	CDS

Position:	Chr02:36870253..36870456 (+ strand)
Length:	204
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G262500.01
TTACTGAGAA ACTCGTCAAC ACCTGTCTCT GGCTTTCGAA GAGAGAAATC GGAGATGTCA TCGCACACTA ACGATCCCCG
TCAGCCATCG GCGGCGAGAC CCTACGTGGC ACCGCAGATT GCACCGCAGG ACCTGCCGAT CGATTACGCC GGATTCATCG
CCGTCATATT TGGCGTCGGC GGCGTTATGT TTAGGTACAA ACTGAGCTCC TGGCTGGCAC TCATATTCTG CGCGCAATCC
GTAGCGAACA TGCGGAATGT CGAGAACGAT CTCAAACAAG TTATGATGGC TATGATGTTT TCTCTAATGG GATTGATAAC
AAACTACTTT GGACCTCCCA GACCCGGCAA ACAAAGCTGA AATCTCAAGA TTTTGAGGTA GAAATACGCC ATTTTTTTAA
GTGAGGGAAG TTTAAGTTAT TCAGTGTTTC CCTTTTCATT ATGTCGTCTG TATTAAAGAT GCTTGCCAAG TCTGGATAAT
TTGACGTTTT TCTGATTATA TATTAAAAAG ATAGTTTACT ATGGAATCGA GAGCTACAAC ATTTTGCACA TTTGTTTTTC
TAAA

[show][hide][copy]CDS

>Vigan.02G262500.01
ATGTCATCGC ACACTAACGA TCCCCGTCAG CCATCGGCGG CGAGACCCTA CGTGGCACCG CAGATTGCAC CGCAGGACCT
GCCGATCGAT TACGCCGGAT TCATCGCCGT CATATTTGGC GTCGGCGGCG TTATGTTTAG GTACAAACTG AGCTCCTGGC
TGGCACTCAT ATTCTGCGCG CAATCCGTAG CGAACATGCG GAATGTCGAG AACGATCTCA AACAAGTTAT GATGGCTATG
ATGTTTTCTC TAATGGGATT GATAACAAAC TACTTTGGAC CTCCCAGACC CGGCAAACAA AGCTGA

[show][hide][copy]PROTEIN

>Vigan.02G262500.01
MSSHTNDPRQ PSAARPYVAP QIAPQDLPID YAGFIAVIFG VGGVMFRYKL SSWLALIFCA QSVANMRNVE NDLKQVMMAM
MFSLMGLITN YFGPPRPGKQ S*