VIGGS:GBrowse

Vigan.02G263200.01

Basic Information:

Name:	Vigan.02G263200.01 Multiple alignment Variant Information
Position:	Chr02:36962986..36965991 (- strand)
Length:	3006

Functional Information:

Description:	Similar to protein. [D7LHJ1, Arabidopsis lyrata subsp. lyrata]
InterPro:	Protein of unknown function DUF1068 (IPR010471)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:24.07,20.51,34.24,24.85,56.80,85.79,32.26,40.84
Arabidopsis thaliana homolog:	AT2G24290.1

Automatic updates:

Name:	NM_001248710 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527407 (LOC100527407), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249659 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527477 (LOC100527477), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:36962986..36963243 (- strand)
Length:	258
Type:	three_prime_UTR

Position:	Chr02:36963244..36963545 (- strand)
Length:	302
Type:	CDS

Position:	Chr02:36965289..36965312 (- strand)
Length:	24
Type:	CDS

Position:	Chr02:36965434..36965641 (- strand)
Length:	208
Type:	CDS

Position:	Chr02:36965642..36965991 (- strand)
Length:	350
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G263200.01
GGAGAAGATG TTAGTTATAA TTAGCAACAG TTTGATAGTG GTTTGCTAAC TAAAGTGGGC ATTATCCCAA ACATATGAAA
AAGCAGTGAA AGTAAAATAA TTAAAAAGAA ACATGTTGGA AGACAGTGTA TGATGAAAGA GACACGCGCA GTGTACTTGC
GACTTCTTCA ATCGGGCAAA ACGCACTTAC AACATTAAAG GTGGATTTGG GTCCAACAAC GTTATTACTA TAATTATTGT
TATTATTATT ATTACTAGTT CTTCCTTCTG CTGTGCAGTG GGAAATAAAA TCATTACTGT GAATAGTGTG AATTGGTTTG
GATCAGATCT GTGTTTCTTG TCGGAGAGAT ATGTCACGGG GGAGATCTGA TTCTGGTGGT TGGTTGAGGG GGTGTTTGGT
GGTGTTCGCG GTGGTTTCCG CCTTGGGAGT GTGTGGGCCT GCGCTCTACT GGCGATTCAA GAACGCCATC TCTCTCCGCA
ATTCCCACAA CAAATTCTCT TGCCCTCCTT GCCTCTGCAA CTGCCCTCCC CCACTATCGC TATTCCAACT CGCTCCTGGA
TTGGCGAATC TCTCTGTCTC AGATTGTGGA AGTAATGACC CGGATCTAAA GGAGGAGATG GAGAAGCAGT TTGTGGACCT
TCTAAGCGAA GAGTTGAAGT TGCAAGAGTC TGTTACTGAG GCAAACACCC GGCACATGAA CATAACTTTG GCTGAAGCAA
GAAGAGTGGC ATCTCAGTAT CAGAGAGAGG CTGACAAATG TATTGCTGCA ACTGAAACAT GTGAGCAGGC AAGAGAACGA
GCTGAGGCCA TACTCATCAA GGAGAGAAAG ATAACTGCGG TGTGGGAGCG ACGTGCTCGT CAAATGGGTT GGGAAGCAGA
ATAACTGCAT AAGTTTTGTT ATTTATATTC TTTATGGCTA TAATCATGAT TATGGTTTTA CACAAGAATA CAAGCAAAAT
GCTTGGTTTG TCCACCAATT TAGGTTAAAA TTGATATCCT TACTGTGTTT GTAACTGTAT CCCTTATATG CTAGTATCAA
ACAAATTTTA TGTCAGATAA TTAGTCTGTT ACCAAGGTTA TAACTCATGT TCATCGACTT GATTATTTTT ATACCCTATA
TTTAGCTCTG GTTTGAAGTA AA

[show][hide][copy]CDS

>Vigan.02G263200.01
ATGTCACGGG GGAGATCTGA TTCTGGTGGT TGGTTGAGGG GGTGTTTGGT GGTGTTCGCG GTGGTTTCCG CCTTGGGAGT
GTGTGGGCCT GCGCTCTACT GGCGATTCAA GAACGCCATC TCTCTCCGCA ATTCCCACAA CAAATTCTCT TGCCCTCCTT
GCCTCTGCAA CTGCCCTCCC CCACTATCGC TATTCCAACT CGCTCCTGGA TTGGCGAATC TCTCTGTCTC AGATTGTGGA
AGTAATGACC CGGATCTAAA GGAGGAGATG GAGAAGCAGT TTGTGGACCT TCTAAGCGAA GAGTTGAAGT TGCAAGAGTC
TGTTACTGAG GCAAACACCC GGCACATGAA CATAACTTTG GCTGAAGCAA GAAGAGTGGC ATCTCAGTAT CAGAGAGAGG
CTGACAAATG TATTGCTGCA ACTGAAACAT GTGAGCAGGC AAGAGAACGA GCTGAGGCCA TACTCATCAA GGAGAGAAAG
ATAACTGCGG TGTGGGAGCG ACGTGCTCGT CAAATGGGTT GGGAAGCAGA ATAA

[show][hide][copy]PROTEIN

>Vigan.02G263200.01
MSRGRSDSGG WLRGCLVVFA VVSALGVCGP ALYWRFKNAI SLRNSHNKFS CPPCLCNCPP PLSLFQLAPG LANLSVSDCG
SNDPDLKEEM EKQFVDLLSE ELKLQESVTE ANTRHMNITL AEARRVASQY QREADKCIAA TETCEQARER AEAILIKERK
ITAVWERRAR QMGWEAE*