GBrowse Details

Vigan.02G269200.01

Basic Information:
Name: Vigan.02G269200.01
Multiple alignment
Variant Information
Position: Chr02:37624896..37629643 (- strand)
Length: 4748
Functional Information:
Description: Similar to Heme oxygenase 1. [K9K2Z7, Glycine max]
GO: Biological Process: heme oxidation (GO:0006788)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: heme oxygenase (decyclizing) activity (GO:0004392)
InterPro: Haem oxygenase-like (IPR016053)
Haem oxygenase-like, multi-helical (IPR016084)
Haem oxygenase (decyclizing), plant (IPR016951)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:396.39,162.79,65.40,83.92,96.11,62.76,44.88,30.84
Arabidopsis thaliana homolog: AT2G26670.1
Automatic updates:
Name: NM_001317450 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heme oxygenase 1, chloroplastic (LOC547612), mRNA.
PubMed ID: 18228149 NCBI(pubmed)
11402195 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:37624896..37625305 (- strand)
Length: 410
Type: three_prime_UTR
Position: Chr02:37625306..37625398 (- strand)
Length: 93
Type: CDS
Position: Chr02:37625581..37625688 (- strand)
Length: 108
Type: CDS
Position: Chr02:37627846..37628069 (- strand)
Length: 224
Type: CDS
Position: Chr02:37628892..37629303 (- strand)
Length: 412
Type: CDS
Position: Chr02:37629304..37629643 (- strand)
Length: 340
Type: five_prime_UTR


>Vigan.02G269200.01
AGTAATTGTG TTTTTAAAAG AAAATAAAAG AGATAAGTAG TGAGTCGAAC ACATGGGTCG GGTCGAACTT AAGAAGAAGG
CACATACATA GAAATCTGCA GACATCTCCG ACAATCGTCC TTCGCTCTAT CTTTGAAAGC ACCAATCAAC ATCATTATTT
TATTATTTTC TTTATATTAT ATTTATTATT ATTCGGAATC CATCGCTTTT TCTTGAAGAT TACTGCATCA TCCATTCCTC
TTATTTTAAT CTCTGTATCG CACACACTCA CTCACGAGTA GCGTGCCCGT TCTTCTGCTG CGCCTTCACA TCAACGTTTT
CGTGCACTCA ACTATCTCCA ATGGCGTCAC TAATAGCTGT GTCGCAGACC CAATTGCTGT ATATTAAGCC CCGTTTGGTG
TCGCCGCCTC ATCAATCACG CTCCCTTTTC TTGCCAACGG GGTTACCAGC GGGAGTTCGA GGGGTCCGGG CTACCATGCC
GAGAAAGGCG GTTATTGTGT CGGCGGCGAC GGCTGAGACG CCGAAGAAGA AGGGGGAGTC TAAGGGCTTC GTGGAGGAGA
TGAGGTTCGT GGCGATGAGG CTGCACACCA GGGACCAGGC CAAGGAGGGG GAGAAGGAGG TGAAACAACC CGAAGAGAAA
GCCGTTACCA AGTGGGACCC AACTGTTGAA GGCTACCTCA AGTTTCTTGT GGATAGTAAG GTCGTTTACG ACACGTTAGA
AGACATCGTT CAAGAGGCTC CTCATCCTTC TTATGCTGAA TTCAGAAAGA CTGGATTGGA AAGGTCTGAA AGTTTGAAAG
AAGATTTGGA GTGGTTCAAG GAGAAAGGTT ATACTATTCC TGAACCTTCT TCTCCAGGAC TTACCTATGC ACAGTATCTT
AAGGAATTAT CCATGAAGGA TCCTCAAGCA TTCATTTGCC ACTTTTACAA CATCTACTTT GCTCATTCAG CTGGTGGTCG
AATGATTGGG AGAAAGGTTG CTGAACAGTT GCTTGACAAC AAGGCATTAA AGTTCTACAA ATGGGACGGT GACCTTCCCC
AGTTGTTACA GAGCGTGAGG GACAAATTGA ATAAAGTTGC TGAAGGTTGG ACTAGGGAAG AAAAGAACCA CTGTCTGGAA
GAAACAGAAA AGTCGTTCAA GTTATCGGGA GAGATTCTCC GACTGATTCT ATCGTGATAT TAAAGTGCCC TGCTGTATGT
GCTATCTGTG TAATTATGGT TATTAAAGTG CATGGCGGAA GCCAAGAACA TTATATGTGA ATTATTTAAT TTCCAATGCA
AAGAAATAAT AGGACTGATG TTGATTAACT TGCTTTTGTC AAATGGGGGG CTTTGATGGG TCCTAAGACA AAAAAAAGGC
TTCCATGATA TTGATAGAAG CTGACTTTTA TTGATAACTC TTGAACTTGA TCAGAAAATT TAGAAGTGTA AAGATAAATT
TATAGGTCAG TATCTACGTT GAATTTCAAT CCTAAATCTA CTTCCTTCTG GGATTTTCCT GTCAATTCAG GCTCCACTTG
CTTTATCTAT CTTTTCCTTA AATTCTTGTT CGCTCTAAAT CGTATATCCC TTGCCCACAA CACCACC

>Vigan.02G269200.01
ATGGCGTCAC TAATAGCTGT GTCGCAGACC CAATTGCTGT ATATTAAGCC CCGTTTGGTG TCGCCGCCTC ATCAATCACG
CTCCCTTTTC TTGCCAACGG GGTTACCAGC GGGAGTTCGA GGGGTCCGGG CTACCATGCC GAGAAAGGCG GTTATTGTGT
CGGCGGCGAC GGCTGAGACG CCGAAGAAGA AGGGGGAGTC TAAGGGCTTC GTGGAGGAGA TGAGGTTCGT GGCGATGAGG
CTGCACACCA GGGACCAGGC CAAGGAGGGG GAGAAGGAGG TGAAACAACC CGAAGAGAAA GCCGTTACCA AGTGGGACCC
AACTGTTGAA GGCTACCTCA AGTTTCTTGT GGATAGTAAG GTCGTTTACG ACACGTTAGA AGACATCGTT CAAGAGGCTC
CTCATCCTTC TTATGCTGAA TTCAGAAAGA CTGGATTGGA AAGGTCTGAA AGTTTGAAAG AAGATTTGGA GTGGTTCAAG
GAGAAAGGTT ATACTATTCC TGAACCTTCT TCTCCAGGAC TTACCTATGC ACAGTATCTT AAGGAATTAT CCATGAAGGA
TCCTCAAGCA TTCATTTGCC ACTTTTACAA CATCTACTTT GCTCATTCAG CTGGTGGTCG AATGATTGGG AGAAAGGTTG
CTGAACAGTT GCTTGACAAC AAGGCATTAA AGTTCTACAA ATGGGACGGT GACCTTCCCC AGTTGTTACA GAGCGTGAGG
GACAAATTGA ATAAAGTTGC TGAAGGTTGG ACTAGGGAAG AAAAGAACCA CTGTCTGGAA GAAACAGAAA AGTCGTTCAA
GTTATCGGGA GAGATTCTCC GACTGATTCT ATCGTGA

>Vigan.02G269200.01
MASLIAVSQT QLLYIKPRLV SPPHQSRSLF LPTGLPAGVR GVRATMPRKA VIVSAATAET PKKKGESKGF VEEMRFVAMR
LHTRDQAKEG EKEVKQPEEK AVTKWDPTVE GYLKFLVDSK VVYDTLEDIV QEAPHPSYAE FRKTGLERSE SLKEDLEWFK
EKGYTIPEPS SPGLTYAQYL KELSMKDPQA FICHFYNIYF AHSAGGRMIG RKVAEQLLDN KALKFYKWDG DLPQLLQSVR
DKLNKVAEGW TREEKNHCLE ETEKSFKLSG EILRLILS*