GBrowse Details

Vigan.02G286300.01

Basic Information:
Name: Vigan.02G286300.01
Multiple alignment
Variant Information
Position: Chr02:39749607..39751373 (+ strand)
Length: 1767
Functional Information:
Description: Similar to 60S ribosomal protein L32-1-like. [XP_003538445.2, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L32e (IPR001515)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.75,107.88,81.70,37.82,140.69,205.44,113.93,70.82
Automatic updates:
Name: NM_001249897 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499846 (LOC100499846), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250339 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527779 (LOC100527779), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251349 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306401 (LOC100306401), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251485 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L32-1 (LOC100499946), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001255379 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L32-1-like (LOC100802667), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:39749607..39749649 (+ strand)
Length: 43
Type: five_prime_UTR
Position: Chr02:39749650..39749775 (+ strand)
Length: 126
Type: CDS
Position: Chr02:39750759..39750940 (+ strand)
Length: 182
Type: CDS
Position: Chr02:39751046..39751175 (+ strand)
Length: 130
Type: CDS
Position: Chr02:39751176..39751373 (+ strand)
Length: 198
Type: three_prime_UTR


>Vigan.02G286300.01
GTTCTTCAAA AACCTAGCCC ATATTAATTT TCATGTTTTA TAAATGTTGA GAAGCAAAGG AAACCCTAAG TTAGTAAAAA
TGGCGGTACC CTTGATCTCG AAGAAGATCG TGAAGAAGCG AGTGAAGAAG TTCAAGCGCC CCCAAAGCGA TCGCAAGATC
TCCGTCAAGC CAAGCTGGCG CAGACCCAAG GGTATTGACT CTCGTGTCAG GAGAAAGTTC AAAGGATGCA CTTTGATGCC
CAACATTGGT TATGCTTCAG ACAAGAGAAC TCGCCATTAT CTTCCAAATG GTTTTAAGAA ATTTGTTGTG CACAATGTGA
AGGACCTTGA ACTTCTCATG ATGCATAATA GGACGTACTG TGCTGAGATT GCTCACAATG TGTCCACAAG GAAGAGGAAG
GACATTGTTG AGAGAGCTGC TCAGCTTGAT GTAGTTGTGA CAAACAAAAC TGCCAGACTG CGCAGCCAGG AAGATGAATA
GATTCCAATG TCTGGGAGAC GATTTTATGT TTTGTAGTGA GCTTCAATTG ACACAATTAG TAGATTTTGA TTGCTTTTTG
CTATTTTCGT TGTCAAAACC ATTTTGCAAT GTCATACGTT TATTATGTCG CCAAATGTTT ACTGTTACAA ATTATTTTTA
CCCAATTTTG AGTTAATATT ACCGTCTAGT TAAAGCCAA

>Vigan.02G286300.01
ATGTTGAGAA GCAAAGGAAA CCCTAAGTTA GTAAAAATGG CGGTACCCTT GATCTCGAAG AAGATCGTGA AGAAGCGAGT
GAAGAAGTTC AAGCGCCCCC AAAGCGATCG CAAGATCTCC GTCAAGCCAA GCTGGCGCAG ACCCAAGGGT ATTGACTCTC
GTGTCAGGAG AAAGTTCAAA GGATGCACTT TGATGCCCAA CATTGGTTAT GCTTCAGACA AGAGAACTCG CCATTATCTT
CCAAATGGTT TTAAGAAATT TGTTGTGCAC AATGTGAAGG ACCTTGAACT TCTCATGATG CATAATAGGA CGTACTGTGC
TGAGATTGCT CACAATGTGT CCACAAGGAA GAGGAAGGAC ATTGTTGAGA GAGCTGCTCA GCTTGATGTA GTTGTGACAA
ACAAAACTGC CAGACTGCGC AGCCAGGAAG ATGAATAG

>Vigan.02G286300.01
MLRSKGNPKL VKMAVPLISK KIVKKRVKKF KRPQSDRKIS VKPSWRRPKG IDSRVRRKFK GCTLMPNIGY ASDKRTRHYL
PNGFKKFVVH NVKDLELLMM HNRTYCAEIA HNVSTRKRKD IVERAAQLDV VVTNKTARLR SQEDE*