VIGGS:GBrowse

Vigan.02G286300.01

Basic Information:

Name:	Vigan.02G286300.01 Multiple alignment Variant Information
Position:	Chr02:39749607..39751373 (+ strand)
Length:	1767

Functional Information:

Description:	Similar to 60S ribosomal protein L32-1-like. [XP_003538445.2, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L32e (IPR001515)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:36.75,107.88,81.70,37.82,140.69,205.44,113.93,70.82

Automatic updates:

Name:	NM_001249897 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499846 (LOC100499846), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250339 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527779 (LOC100527779), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251349 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306401 (LOC100306401), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251485 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 60S ribosomal protein L32-1 (LOC100499946), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001255379 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 60S ribosomal protein L32-1-like (LOC100802667), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:39749607..39749649 (+ strand)
Length:	43
Type:	five_prime_UTR

Position:	Chr02:39749650..39749775 (+ strand)
Length:	126
Type:	CDS

Position:	Chr02:39750759..39750940 (+ strand)
Length:	182
Type:	CDS

Position:	Chr02:39751046..39751175 (+ strand)
Length:	130
Type:	CDS

Position:	Chr02:39751176..39751373 (+ strand)
Length:	198
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.02G286300.01 class=Sequence position=Chr02:39749607..39751373 (+ strand)
GTTCTTCAAA AACCTAGCCC ATATTAATTT TCATGTTTTA TAAATGTTGA GAAGCAAAGG AAACCCTAAG TTAGTAAAAA
TGGCGGTACC CTTGATCTCG AAGAAGATCG TGAAGAAGCG AGTGAAGAAG TTCAAGCGCC CCCAAAGCGA TCGCAAGATC
TCCGTCAAGG TCAGTCAACT GTGTGAGTGA AGTTCATTAC GGTTGTGATT TTTTTAGCTT TGTTTAGGTT GAAATGATGA
TGGTTATTGT CGCCCCAGTC TTAATTTGCA CCAGACGGTG TAAGATGGTG AATGACATTA TTATCTGATC CCTGTTTTTC
AATTTTAGTA TATTAGTTTT AGGTTTAGAT TCTTCCTTTC TTCCATGTTT GCGAATCTCT TCGTTTACAT CTGATGGGGA
TTTGAGTGTG TTTTGCAGAC TGGCCTTACT TTGTGCATGT TGATAAAGTG ATATGTTTTT GTTTTTTCTG AAGCACTTTC
TCTATGCCAT TGTTTATTAT TTAAGTTTAA TAAGTTTATT TTTAAATGCA GTGATATATG ATGTTATTTA TACATCAATT
CTGCAACATG AATGATGATT CTTAATCATG CACTGGCATC TGATCTCTCT GCAGTTTTTT TTTTTACTTT ATAGCTAATA
TTATTTTTCA CATTATTCAT TAAGGATGCT TTTATGTATT TTCAGGCCAC GGTGGCCTAA TCCTGATAAC TTGTTTTCCC
TAAATACTGT TGTCGTTTTA AGCTAGAGTC TAATATTGCT CTGCAATCTG TGATGATTTT TAGAAGTACT CTGATTAATC
AGTGATTATT TTACCAAATC ACCATCTTTC GGCTGAGATT GCAGAATGGT ATTCTACTGC ATGAATTTGT ATAAATTTCA
TTCATGGGCA TGGCTAGCCG TTACTTAACA TGATACTTCA CTTTTATTTT CTTGTAATTT TTTAAATCAT GCTAGCTAGG
ACTGAGTGAA AATTTCCTGA CATGTTAATG TAGGATTATA CTTTTCCTTT TTTTTAATCT TTTTGGTGCT AGCATTTTTT
GTGGAAATGT CGGTTTAGGT AAATTTTTAA AATAAAGATG TCAAAAAGGT TTGAAACTAG TTGGTTATGT TCTAATGCGA
GTAGTCATGT TTTACAATTT GTGTTTTGAC AGCCAAGCTG GCGCAGACCC AAGGGTATTG ACTCTCGTGT CAGGAGAAAG
TTCAAAGGAT GCACTTTGAT GCCCAACATT GGTTATGCTT CAGACAAGAG AACTCGCCAT TATCTTCCAA ATGGTTTTAA
GAAATTTGTT GTGCACAATG TGAAGGACCT TGAACTTCTC ATGATGCATA ATAGGTGAGT AATTTAATTT TACTAATTTC
ATTGCATGCA TGTTTTTTTT AAGGTGCACA ACGTACACGT TTGCTGAGTT TTCTGTTTCT TATGTTAACA TCAATTCAGG
ACGTACTGTG CTGAGATTGC TCACAATGTG TCCACAAGGA AGAGGAAGGA CATTGTTGAG AGAGCTGCTC AGCTTGATGT
AGTTGTGACA AACAAAACTG CCAGACTGCG CAGCCAGGAA GATGAATAGA TTCCAATGTC TGGGAGACGA TTTTATGTTT
TGTAGTGAGC TTCAATTGAC ACAATTAGTA GATTTTGATT GCTTTTTGCT ATTTTCGTTG TCAAAACCAT TTTGCAATGT
CATACGTTTA TTATGTCGCC AAATGTTTAC TGTTACAAAT TATTTTTACC CAATTTTGAG TTAATATTAC CGTCTAGTTA
AAGCCAA

[show][hide][copy]TRANSCRIPT

>Vigan.02G286300.01
GTTCTTCAAA AACCTAGCCC ATATTAATTT TCATGTTTTA TAAATGTTGA GAAGCAAAGG AAACCCTAAG TTAGTAAAAA
TGGCGGTACC CTTGATCTCG AAGAAGATCG TGAAGAAGCG AGTGAAGAAG TTCAAGCGCC CCCAAAGCGA TCGCAAGATC
TCCGTCAAGC CAAGCTGGCG CAGACCCAAG GGTATTGACT CTCGTGTCAG GAGAAAGTTC AAAGGATGCA CTTTGATGCC
CAACATTGGT TATGCTTCAG ACAAGAGAAC TCGCCATTAT CTTCCAAATG GTTTTAAGAA ATTTGTTGTG CACAATGTGA
AGGACCTTGA ACTTCTCATG ATGCATAATA GGACGTACTG TGCTGAGATT GCTCACAATG TGTCCACAAG GAAGAGGAAG
GACATTGTTG AGAGAGCTGC TCAGCTTGAT GTAGTTGTGA CAAACAAAAC TGCCAGACTG CGCAGCCAGG AAGATGAATA
GATTCCAATG TCTGGGAGAC GATTTTATGT TTTGTAGTGA GCTTCAATTG ACACAATTAG TAGATTTTGA TTGCTTTTTG
CTATTTTCGT TGTCAAAACC ATTTTGCAAT GTCATACGTT TATTATGTCG CCAAATGTTT ACTGTTACAA ATTATTTTTA
CCCAATTTTG AGTTAATATT ACCGTCTAGT TAAAGCCAA

[show][hide][copy]CDS

>Vigan.02G286300.01
ATGTTGAGAA GCAAAGGAAA CCCTAAGTTA GTAAAAATGG CGGTACCCTT GATCTCGAAG AAGATCGTGA AGAAGCGAGT
GAAGAAGTTC AAGCGCCCCC AAAGCGATCG CAAGATCTCC GTCAAGCCAA GCTGGCGCAG ACCCAAGGGT ATTGACTCTC
GTGTCAGGAG AAAGTTCAAA GGATGCACTT TGATGCCCAA CATTGGTTAT GCTTCAGACA AGAGAACTCG CCATTATCTT
CCAAATGGTT TTAAGAAATT TGTTGTGCAC AATGTGAAGG ACCTTGAACT TCTCATGATG CATAATAGGA CGTACTGTGC
TGAGATTGCT CACAATGTGT CCACAAGGAA GAGGAAGGAC ATTGTTGAGA GAGCTGCTCA GCTTGATGTA GTTGTGACAA
ACAAAACTGC CAGACTGCGC AGCCAGGAAG ATGAATAG

[show][hide][copy]PROTEIN

>Vigan.02G286300.01
MLRSKGNPKL VKMAVPLISK KIVKKRVKKF KRPQSDRKIS VKPSWRRPKG IDSRVRRKFK GCTLMPNIGY ASDKRTRHYL
PNGFKKFVVH NVKDLELLMM HNRTYCAEIA HNVSTRKRKD IVERAAQLDV VVTNKTARLR SQEDE*