GBrowse Details

Vigan.02G288000.01

Basic Information:
Name: Vigan.02G288000.01
Multiple alignment
Variant Information
Position: Chr02:39988004..39993046 (+ strand)
Length: 5043
Functional Information:
Description: Similar to Uncharacterized protein. [I1L248, Glycine max]
GO: Biological Process: transport (GO:0006810)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: membrane (GO:0016020)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: transporter activity (GO:0005215)
Molecular Function: transmembrane transporter activity (GO:0022857)
Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891)
InterPro: Sugar/inositol transporter (IPR003663)
General substrate transporter (IPR005828)
Sugar transporter, conserved site (IPR005829)
Major facilitator superfamily domain, general substrate transporter (IPR016196)
Major facilitator superfamily domain (IPR020846)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.81,1.28,63.52,89.49,10.52,58.28,18.95,62.66
Arabidopsis thaliana homolog: AT1G30220.1, AT2G35740.1, AT4G16480.1
Automatic updates:
Name: NM_001361194 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative inositol transporter (LOC100796800), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:39988004..39988118 (+ strand)
Length: 115
Type: five_prime_UTR
Position: Chr02:39988119..39988251 (+ strand)
Length: 133
Type: CDS
Position: Chr02:39988647..39988717 (+ strand)
Length: 71
Type: CDS
Position: Chr02:39990420..39990755 (+ strand)
Length: 336
Type: CDS
Position: Chr02:39991222..39991329 (+ strand)
Length: 108
Type: CDS
Position: Chr02:39991411..39991998 (+ strand)
Length: 588
Type: CDS
Position: Chr02:39992267..39992740 (+ strand)
Length: 474
Type: CDS
Position: Chr02:39992741..39993046 (+ strand)
Length: 306
Type: three_prime_UTR


>Vigan.02G288000.01
ATACACTACC CATTGCAGTC TCTTCTCTCC GTATCTCAAA CTCAACACAC AACCTTTGCT CAAACAAAAA ACACCAACGT
TGTTTTTCCT CTTTCTCTTC TTCTTTTCTC TTCCCATGGA AGGAGGTGTG CCTGAGGCTG ATATCTCAGC TTTCAGAGAA
TGTTTATCTC TTTCATGGAA AAACCCTTAC GTTCTTCGCC TTGCTTTCTC TGCTGGAATC GGTGGTCTTC TCTTTGGTTA
TGACACTGGA GTTATATCTG GGGCTCTGTT GTATATCAGA GATGAATTCA AAGAAGTGGA TAGAAAAACT TGGCTTCAGG
AAGCCATAGT GAGTACTGCA ATTGCTGGAG CAATCATCGG GGCTTCAGTT GGAGGATGGA TCAACGATCG ATTTGGAAGA
AAGAAAGGAA TTGTTCTAGC AGATATCCTC TTTTTTGTTG GGTCTGCTAT TATGGCTGCT GCGAAAAGCC CAGCTGTTCT
CATTGTGGGT CGTGTGTTCG TTGGCATTGG TGTTGGTATG GCTTCAATGG CATCGCCCCT CTACATTTCA GAGGCTTCAC
CAACCCGAGT AAGAGGAGCC CTTGTGAGTC TCAACAGTTT TCTCATCACT GGAGGACAGT TCCTTTCATA CCTCATCAAC
TTGGCCTTCA CCAAGGCACC AGGGACATGG AGGTGGATGT TAGGGGTAGC AGCAGCACCA GCTTTGGTTC AAGTTGTATT
AATGTTGACA CTCCCAGAAT CACCTCGTTG GCTGTACCGA AAGGGTAGGG AAGAGGAGGC AAAAGCAATT CTGAAAAAGA
TTTACCCGCC TAGCGAAGTT GAAAGTGAAA TTCAGGCTTT GAAGGAATCA GTTGATATGG AAATTAAGGA ATCATCAGAG
AATGTCAGCT TGATCAAACT GTTGAGAACC CCAGCTGTGA GAAGAGGTTT ATATGCAGGC ATGGGTCTTC TAATCTTCCA
GCAGTTTGTG GGGATCAACA CTGTGATGTA CTACAGCCCC ACCATTGTTC AGTTAGCTGG TTTTGCATCT AACAGAACAG
CACTGCTTCT GTCACTCATC ATAGCTGGTC TGAATGCATT TGGTTCAATT GTGAGTATAT ACTTTATTGA CAAGACTGGG
AGGAAAAAGC TTGCTCTGAT CAGTTTGTGT GGAGTTGTGT TCTCCCTGGC TATGCTAACT GTCTCTTTTC GAGAAAGTGA
AATTCATGCT CCAATGGTGA GTGCCATTGG AACCTCTCAG TTCAACAACA CATGTCCTGA TTACAAAGCA GCTCTGAACC
CTAATGAATG GAGTTGCATG ACATGCCTAA AGGCTTCACC ATCTTGTGGT TTTTGTGCTG CCGATGACAA GCTTTTACCC
GGGGCATGTC TGATCTCCAA TGTTATCACA AAGAATTTGT GTGGCAGTGA TCATAGGGCA TGGTACACTA GGGGGTGTCC
TAGCAAATAT GGTTGGACCG CCTTAGTAGG CCTTGCGCTT TACATAATTT TCTTCTCACC TGGGATGGGA ACTGTTCCAT
GGGTTGTGAA CTCTGAAATC TATCCCTTGA GGTACAGAGG AATCTGTGGA GGAATGGCAT CAACAACTGT TTGGATTTCC
AACCTCATTG TTTCAGAATC CTTTTTGTCC TTGACAGAAG CTATTGGGAC AGCGTGGACA TTCATGATGT TTGGAATTGT
AGCCGTTGTG GCCATTTTCT TTGTCGTTAT ATATGTACCT GAGACCAAAG GGGTTCCAAT GGAAGAAGTG GAGAAGATGC
TGGAACAAAG ATCATTGCAG TTTAAGTTTT GGCAGAAGAG ATATTCTGGC ACTGAGAAGC ACTGACTCAA ACAAGAACAA
AGAACCTTGT TTGAGTCATG TTTAGTTGTT GTAGCTTTAA ATAGTGAATT AAGTGGCTTG TGAAATATGG TATTGACAAT
GGTTTCTTTG GGTAAGATTT GTGATAGTTA GAATTTTAGC CCTAATGTGT ATGTAGTTGA TTAGCTGGGT TGCTGAAAAT
CCTTGTGAGA TCCCTAGAGG ATTGATATTA AGTTCTTCTT TGTGAACTAA TAAAAAATAT TAAATTATTA TCTATTGCTT
TACATTTTCT TGAAACTTAT TCAATATAAA GAATTTGATC TTCTAACGTA A

>Vigan.02G288000.01
ATGGAAGGAG GTGTGCCTGA GGCTGATATC TCAGCTTTCA GAGAATGTTT ATCTCTTTCA TGGAAAAACC CTTACGTTCT
TCGCCTTGCT TTCTCTGCTG GAATCGGTGG TCTTCTCTTT GGTTATGACA CTGGAGTTAT ATCTGGGGCT CTGTTGTATA
TCAGAGATGA ATTCAAAGAA GTGGATAGAA AAACTTGGCT TCAGGAAGCC ATAGTGAGTA CTGCAATTGC TGGAGCAATC
ATCGGGGCTT CAGTTGGAGG ATGGATCAAC GATCGATTTG GAAGAAAGAA AGGAATTGTT CTAGCAGATA TCCTCTTTTT
TGTTGGGTCT GCTATTATGG CTGCTGCGAA AAGCCCAGCT GTTCTCATTG TGGGTCGTGT GTTCGTTGGC ATTGGTGTTG
GTATGGCTTC AATGGCATCG CCCCTCTACA TTTCAGAGGC TTCACCAACC CGAGTAAGAG GAGCCCTTGT GAGTCTCAAC
AGTTTTCTCA TCACTGGAGG ACAGTTCCTT TCATACCTCA TCAACTTGGC CTTCACCAAG GCACCAGGGA CATGGAGGTG
GATGTTAGGG GTAGCAGCAG CACCAGCTTT GGTTCAAGTT GTATTAATGT TGACACTCCC AGAATCACCT CGTTGGCTGT
ACCGAAAGGG TAGGGAAGAG GAGGCAAAAG CAATTCTGAA AAAGATTTAC CCGCCTAGCG AAGTTGAAAG TGAAATTCAG
GCTTTGAAGG AATCAGTTGA TATGGAAATT AAGGAATCAT CAGAGAATGT CAGCTTGATC AAACTGTTGA GAACCCCAGC
TGTGAGAAGA GGTTTATATG CAGGCATGGG TCTTCTAATC TTCCAGCAGT TTGTGGGGAT CAACACTGTG ATGTACTACA
GCCCCACCAT TGTTCAGTTA GCTGGTTTTG CATCTAACAG AACAGCACTG CTTCTGTCAC TCATCATAGC TGGTCTGAAT
GCATTTGGTT CAATTGTGAG TATATACTTT ATTGACAAGA CTGGGAGGAA AAAGCTTGCT CTGATCAGTT TGTGTGGAGT
TGTGTTCTCC CTGGCTATGC TAACTGTCTC TTTTCGAGAA AGTGAAATTC ATGCTCCAAT GGTGAGTGCC ATTGGAACCT
CTCAGTTCAA CAACACATGT CCTGATTACA AAGCAGCTCT GAACCCTAAT GAATGGAGTT GCATGACATG CCTAAAGGCT
TCACCATCTT GTGGTTTTTG TGCTGCCGAT GACAAGCTTT TACCCGGGGC ATGTCTGATC TCCAATGTTA TCACAAAGAA
TTTGTGTGGC AGTGATCATA GGGCATGGTA CACTAGGGGG TGTCCTAGCA AATATGGTTG GACCGCCTTA GTAGGCCTTG
CGCTTTACAT AATTTTCTTC TCACCTGGGA TGGGAACTGT TCCATGGGTT GTGAACTCTG AAATCTATCC CTTGAGGTAC
AGAGGAATCT GTGGAGGAAT GGCATCAACA ACTGTTTGGA TTTCCAACCT CATTGTTTCA GAATCCTTTT TGTCCTTGAC
AGAAGCTATT GGGACAGCGT GGACATTCAT GATGTTTGGA ATTGTAGCCG TTGTGGCCAT TTTCTTTGTC GTTATATATG
TACCTGAGAC CAAAGGGGTT CCAATGGAAG AAGTGGAGAA GATGCTGGAA CAAAGATCAT TGCAGTTTAA GTTTTGGCAG
AAGAGATATT CTGGCACTGA GAAGCACTGA 

>Vigan.02G288000.01
MEGGVPEADI SAFRECLSLS WKNPYVLRLA FSAGIGGLLF GYDTGVISGA LLYIRDEFKE VDRKTWLQEA IVSTAIAGAI
IGASVGGWIN DRFGRKKGIV LADILFFVGS AIMAAAKSPA VLIVGRVFVG IGVGMASMAS PLYISEASPT RVRGALVSLN
SFLITGGQFL SYLINLAFTK APGTWRWMLG VAAAPALVQV VLMLTLPESP RWLYRKGREE EAKAILKKIY PPSEVESEIQ
ALKESVDMEI KESSENVSLI KLLRTPAVRR GLYAGMGLLI FQQFVGINTV MYYSPTIVQL AGFASNRTAL LLSLIIAGLN
AFGSIVSIYF IDKTGRKKLA LISLCGVVFS LAMLTVSFRE SEIHAPMVSA IGTSQFNNTC PDYKAALNPN EWSCMTCLKA
SPSCGFCAAD DKLLPGACLI SNVITKNLCG SDHRAWYTRG CPSKYGWTAL VGLALYIIFF SPGMGTVPWV VNSEIYPLRY
RGICGGMAST TVWISNLIVS ESFLSLTEAI GTAWTFMMFG IVAVVAIFFV VIYVPETKGV PMEEVEKMLE QRSLQFKFWQ
KRYSGTEKH*