GBrowse Details

Vigan.02G294000.01

Basic Information:
Name: Vigan.02G294000.01
Multiple alignment
Variant Information
Position: Chr02:40790405..40795012 (- strand)
Length: 4608
Functional Information:
Description: Similar to Thioesterase superfamily protein. [XP_007036026.1, Theobroma cacao]
InterPro: Phenylacetic acid degradation-related domain (IPR003736)
Thioesterase superfamily (IPR006683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.45,1.81,3.77,5.46,3.01,7.14,4.56,2.43
Automatic updates:
Name: NM_001401085 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527403 (LOC100527403), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:40790405..40791548 (- strand)
Length: 1144
Type: three_prime_UTR
Position: Chr02:40791549..40791701 (- strand)
Length: 153
Type: CDS
Position: Chr02:40794148..40794339 (- strand)
Length: 192
Type: CDS
Position: Chr02:40794523..40794675 (- strand)
Length: 153
Type: CDS
Position: Chr02:40794676..40795012 (- strand)
Length: 337
Type: five_prime_UTR


>Vigan.02G294000.01
CTACCAATCT TTGAACAGTA AAAGCCATAG CACTTTTGAT TTACAGAAGG CCCATGTCTC GTTCCATTTC AATCAAAACT
GCTCCACCAT GACTCTCACA ATCAACACTT CCTCCATCTT CTGCATGACT TATCCAAACT TTTAAATTTC CACGCACCAA
CCTCTCAATC ATATTGTATA AATGCCCCCA AACTACCCTC TAAACACAAC CAATCATTCT ATAGTCCATT TTGTACAACT
TTCCCATTCT GCAAAGCCTC AACCTCCAAA AAACTTTTCC CATAACACAA TCTGTGAACA GGGAAAGCTC ATAGATTTAC
TCTGATCTAT TTTGTTCATG GAGGATCAGC CATCATCATC ATCATCATCA TCATCAAAAT CAAAAACTGC TGCTTTGGAT
CAACCCCTTC ACTTAATGGG GTTTGAAATT GAAGTATTAT CACCACAAAA AGTCTCTGGC CGGCTCCCTG TAACCCAGAA
GTGCTGCCAG CCATTTAAGG TGCTTCATGG AGGGGTTTCA GCATTGATAG CAGAGTCTTT GGCAAGCATG GGAGCACACA
TGGCTTCAGG GTATAAAAGA GTGGCTGGAA TTCAACTCAG CATCAACCAT TTGAAACGAG CTGAGATGGG TGATTTGGTG
CACGCAGAAG CTAAACCTTT AAATGTTGGC AAAACAATTC AGGTATGGGA GGTGCTACTA TGGAAGATTG ATCCTTCAGA
CTCACAAAGA AGATCCTTGG TCTCATCTTC TAGAGTAACT CTAGTAACCA ATATGCCTGT CCCAGTTAAT GCAAAAGATG
CTGCCGATCC ATTAAAGAAG TTTGCAAAAC TGTAAACATA TCCATGACAT TGTTTATTAG TGAAATTCAA AATCTGCTTG
AATACCAAAG GTCTAAATGT TTACGTATCT AATGCTTCGA TATGCACATT TTGATAGACA TAGTACTTCA TGTAAGAAAC
TATATCATAT ACCTGAAAAA TGGTTCACAT AACATCCCAG TCTCAAATAC GCCAACTTAT TTAGTCAATA CCCGTAAATT
ACTAATCCTC AGGATAACAG AGAAACCAGC AGAGAGCTTC TTTCACATTA TTTGCAACAT CAGCTTCAAA GTTAAAAGCC
CAACATGTCC TAGAATCATA TATCAGTATA AACTTGTAAT TTCAATTTTC AACGGAAACC ATGTGGCTGA AAATGCTGTA
CATCTATCCT GTGATTCCTA TTCAACCAAA CCAAGCAAGG TCAATTCTAG AAACATACTT TGGAAATGTT AGGATGTTGG
GTGCTTCTTG CTAGAGGATT TTGATCTGAC AGTGTTCATG TCCTTTGTTC CCATAGGAAC ACCAGCAGTT TTATGCCTAG
CATCAAACAT TAACATAACA TCATCAGAGG TTGACTAACA ACAGCAGCAA AAGCCAGTAT TCACCAAAAA GAAGAACAAA
AATTAAGCTA GAAAAACCTT AACTGTCTGA GAAGACCAAG TTGTTGGGTT AATTCATTCA GCTCCAGACT AGAAAGTTTG
AGAGAAGATA AAGTCCCAGG CACCTCTTCC GAAACAACCT TTGCCAATTT ATTTACTGAA GCTCCTAATC TTCCAAAAGC
CTATGCAAGA AACAAATATC AACCCTTTAA ATTTTATCCA TTCAACACAT CACTGCACAC ATATGGGTTT CCACTAAAAC
AAATGACCAC ATATAAGCCG TATTTAGTGA GAATTCTTCA TGATATAAAC TTTTTTATAT AGTATAATTT TAGTTCAAAC
CAGTAACAAC TGTCGGACCA TTCCGCATTC AACACACCAC TACATACATC TAGGATTAAA AGGAATAATC TACAAGTTAA
ATTTGTTAAA AACACTCTTA CAATATAGCT TGTGTAAATT ATAAGAAACA TCCGCAACCG CAATGTCAAG CATTTCGGGT
CTCCTCTAGA ACATTTTACA TCTGCAACCG TAATTGTCAT CAAAACTCAA GGATTTTAG

>Vigan.02G294000.01
ATGGAGGATC AGCCATCATC ATCATCATCA TCATCATCAA AATCAAAAAC TGCTGCTTTG GATCAACCCC TTCACTTAAT
GGGGTTTGAA ATTGAAGTAT TATCACCACA AAAAGTCTCT GGCCGGCTCC CTGTAACCCA GAAGTGCTGC CAGCCATTTA
AGGTGCTTCA TGGAGGGGTT TCAGCATTGA TAGCAGAGTC TTTGGCAAGC ATGGGAGCAC ACATGGCTTC AGGGTATAAA
AGAGTGGCTG GAATTCAACT CAGCATCAAC CATTTGAAAC GAGCTGAGAT GGGTGATTTG GTGCACGCAG AAGCTAAACC
TTTAAATGTT GGCAAAACAA TTCAGGTATG GGAGGTGCTA CTATGGAAGA TTGATCCTTC AGACTCACAA AGAAGATCCT
TGGTCTCATC TTCTAGAGTA ACTCTAGTAA CCAATATGCC TGTCCCAGTT AATGCAAAAG ATGCTGCCGA TCCATTAAAG
AAGTTTGCAA AACTGTAA

>Vigan.02G294000.01
MEDQPSSSSS SSSKSKTAAL DQPLHLMGFE IEVLSPQKVS GRLPVTQKCC QPFKVLHGGV SALIAESLAS MGAHMASGYK
RVAGIQLSIN HLKRAEMGDL VHAEAKPLNV GKTIQVWEVL LWKIDPSDSQ RRSLVSSSRV TLVTNMPVPV NAKDAADPLK
KFAKL*