VIGGS:GBrowse

Vigan.02G294400.01

Basic Information:

Name:	Vigan.02G294400.01 Multiple alignment Variant Information
Position:	Chr02:40841375..40843792 (+ strand)
Length:	2418

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MHM0, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L18, bacterial-type (IPR004389)
InterPro:	Ribosomal protein L18/L5 (IPR005484)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.45,9.79,42.29,126.80,15.93,72.47,9.33,27.49
Arabidopsis thaliana homolog:	AT1G48350.1

Automatic updates:

Name:	NM_001249876 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 50S ribosomal protein L18, chloroplastic (LOC100306308), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:40841375..40841493 (+ strand)
Length:	119
Type:	five_prime_UTR

Position:	Chr02:40841494..40841670 (+ strand)
Length:	177
Type:	CDS

Position:	Chr02:40841741..40841902 (+ strand)
Length:	162
Type:	CDS

Position:	Chr02:40843376..40843525 (+ strand)
Length:	150
Type:	CDS

Position:	Chr02:40843526..40843792 (+ strand)
Length:	267
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G294400.01
AAAAAAACGA AGTAGACGCT TGAAAAGAAA AACGGAGGTG AAGTGAATGT GGCAGAAGGA TAAGGTGACG ATAAACCGGA
GAAACATTGG TGTCTGTCAT CACTGTAAAG TTGGAAACAA TGTTAGCTTC TTCTCTTTCC TTCCTTCATT CCTGCGGATT
CCCTTCTTCC GCTTCTTCTT CTTCCTCTTC CTTATCCACA CTATCACAAT CAAACCCCAA ACCTTTCGTG GTTGAAGCCA
AAGTTAGGAC CCGAAGGGAA GACAGAACTG CGCGTCACAC TCGCATCAGA AAGAAGGTTG AAGGGACACC CGAGAGGCCG
AGGTTGTCGG TGTTCCGATC CAACAAGCAC CTCTCTGTGC AGGTGATTGA TGATTCCTCG ATGCACACGC TTGCTTCGGC
TTCCACAATG CAGAAGACCT TTGCTGAAGA GTTTAATTAC TCAGCTGGCC CCACAGTTGA AGTAGCAAAA AGGATGGGTG
AGATCATTGC AAAGTCCTGT TTGGAGAAGG GGATCACTAA GGTAGCCTTT GATCGAGGGG GATACCCATA CCATGGCCGT
GTTCAAGCAC TTGCTGAAGC AGCTCGTGAA CATGGCCTAG ATTTCTAAAT GAAGTAGTCC CTGTCCTTTG TATTTCCTGT
TTCAAATTGT AACCGGAGGT TTCAACAATT CTTTATAATG ACATTTTCCT CATTTCCAGC TACTTAGATA TGATCACAAT
GGCTCTTATT CATTCATCAG TTTCTTTTTA CTTGAAGACT GTTACATCTA GTCATAAATG TTGATAATGA TTATATAGTG
TTCAACTCTT ACAAGCATAA AAGTTTTGGA CATGTGATAT TTAGAAGCTG ACAGAAAGCA GCAATCTATT TATAA

[show][hide][copy]CDS

>Vigan.02G294400.01
ATGTTAGCTT CTTCTCTTTC CTTCCTTCAT TCCTGCGGAT TCCCTTCTTC CGCTTCTTCT TCTTCCTCTT CCTTATCCAC
ACTATCACAA TCAAACCCCA AACCTTTCGT GGTTGAAGCC AAAGTTAGGA CCCGAAGGGA AGACAGAACT GCGCGTCACA
CTCGCATCAG AAAGAAGGTT GAAGGGACAC CCGAGAGGCC GAGGTTGTCG GTGTTCCGAT CCAACAAGCA CCTCTCTGTG
CAGGTGATTG ATGATTCCTC GATGCACACG CTTGCTTCGG CTTCCACAAT GCAGAAGACC TTTGCTGAAG AGTTTAATTA
CTCAGCTGGC CCCACAGTTG AAGTAGCAAA AAGGATGGGT GAGATCATTG CAAAGTCCTG TTTGGAGAAG GGGATCACTA
AGGTAGCCTT TGATCGAGGG GGATACCCAT ACCATGGCCG TGTTCAAGCA CTTGCTGAAG CAGCTCGTGA ACATGGCCTA
GATTTCTAA

[show][hide][copy]PROTEIN

>Vigan.02G294400.01
MLASSLSFLH SCGFPSSASS SSSSLSTLSQ SNPKPFVVEA KVRTRREDRT ARHTRIRKKV EGTPERPRLS VFRSNKHLSV
QVIDDSSMHT LASASTMQKT FAEEFNYSAG PTVEVAKRMG EIIAKSCLEK GITKVAFDRG GYPYHGRVQA LAEAAREHGL
DF*