GBrowse Details

Vigan.02G300100.01

Basic Information:
Name: Vigan.02G300100.01
Multiple alignment
Variant Information
Position: Chr02:41567005..41571711 (+ strand)
Length: 4707
Functional Information:
Description: Similar to Cysteine proteinase. [V5N8Z7, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: cysteine-type peptidase activity (GO:0008234)
InterPro: Cysteine peptidase, cysteine active site (IPR000169)
Peptidase C1A, papain C-terminal (IPR000668)
Peptidase C1A, papain (IPR013128)
Proteinase inhibitor I29, cathepsin propeptide (IPR013201)
Cysteine peptidase, histidine active site (IPR025660)
Cysteine peptidase, asparagine active site (IPR025661)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.11,4.46,36.48,1973.82,110.02,1185.88,682.54,75.85
Arabidopsis thaliana homolog: AT3G45310.1
Automatic updates:
Name: NM_001250891 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative cysteine protease (LOC100170694), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:41567005..41567220 (+ strand)
Length: 216
Type: five_prime_UTR
Position: Chr02:41567221..41567518 (+ strand)
Length: 298
Type: CDS
Position: Chr02:41569393..41569508 (+ strand)
Length: 116
Type: CDS
Position: Chr02:41569913..41569986 (+ strand)
Length: 74
Type: CDS
Position: Chr02:41570089..41570353 (+ strand)
Length: 265
Type: CDS
Position: Chr02:41570598..41570729 (+ strand)
Length: 132
Type: CDS
Position: Chr02:41571008..41571143 (+ strand)
Length: 136
Type: CDS
Position: Chr02:41571311..41571348 (+ strand)
Length: 38
Type: CDS
Position: Chr02:41571349..41571711 (+ strand)
Length: 363
Type: three_prime_UTR


>Vigan.02G300100.01
AAAGGATCAT ACTATAGAAA TAAAAAATGA TTCTTAAGAT AAAATAGGGA CAAAAAACTA TAATCCACTC AAATTTAAAA
ATATCTCAGA CTCAAAGATA GAAGGTGTCC TAGCGTGGTC CCAAGATACT TCAGATTTGT TGAATACAAA TACAGCGTAT
TTCCATTGAA GATTCCGCAA GAGTGGGAGA GATCAACAGA AAAGAGAGTA AAACACATGG CGCGGTTTTC AGTGGTGTGG
TGCGCGGTGG CGGTGCTATT GTGCGCCGTG GCGAGCGGGT CATGGTTGGA GGATGCGAAT CCGATTCGGA TGGTGTCGGA
CGTGGAGGGG CAGGTGATTC AGGTGATAGG TCAGTGCCGG AGCGCGGTGT CGTTTGCTCG GTTCGTTGGG AGGTTCGGGA
AGAGTTACCA GAACGAGGAA GAGATGAAGC GGAGGTACGA TATATTCTCG CGAAACCTCA GGTTCATCCG CGCCCACAAC
AAGAAACGTT TGCCCTACAC TCTCTCCGTT AATCATTTTG CTGATTGGAC TTGGGAGGAA TTCCAAACAC ACAGACTAGG
TGCTGCTCAA AATTGCTCTG CCACTCTTAA AGGCAACCAC AAGCTTACCG ATGCTGTTCT TCCTCCAGTG AAAGACTGGA
GGCAAGAAAA TATAGTGAGC GCAGTTAAAG ACCAAGGCAG CTGCGGATCA TGCTGGACAT TCAGCACAAC CGGGGCTTTA
GAAGCAGCCT ATGCACAAGC GCATGGAAAG AGTATCTCTC TTTCTGAGCA GCAACTAGTG GATTGTGCTG GTCATTTCAA
CAACTTTGGC TGTAATGGTG GGTTGCCATC ACAAGCCTTT GAGTACATTA AATACAATGG TGGGCTTGAC ACAGAGGAAG
CATATCCTTA CACGGGAAAA GACGGTGTCT GCAAATTTTC AGCTGAAAAT GTTGGGATTC GAGTCCTTGA TTCTGTCAAC
ATCACCTTGG GTGCTGAGGA TGAATTAAAA CATGCAGTTG CATTTGTTCG ACCAGTTAGT GTGGCCTTTG AGGTTGTTAA
TGGGTTCCGA TTCTATGAGA AAGGAGTTTA CACCAGTGAC ACTTGCGGTA CCACTCCCCT GGATGTGAAC CATGCTGTTC
TTGCTGTTGG GTATGGAGTT GAAAATGGTG TCCCATATTG GCTCATTAAA AACTCATGGG GAGAATCTTG GGGTGACAAT
GGCTACTTCA AGATGGAATT GGGGAAGAAC ATGTGCGGTG TTGCAACTTG TGCTTCTTAT CCAATTGTGG CCTAAATTGC
ATAACAAAAT GGTCCCTAGT CTACCACCTC GCTTGCCATG CGTCAAAGTT TAGAGCATCT GATGCCCGTA TTAATGATTA
AAGATACGTG CCATTGTATA AAGAAAATTA CTGCTAGTTG TGTTGGCACG ATATAAAATA AGCTAGAAGT TGTTGTAAAT
GCTTAAGAAT ATCATGCACT GGATCGTGTG TATCACATAC TTGATAATGA TCATAAATTG TTAGTTATCA TAAAAATTGC
TGCAAAAGCT GTTTTTAATG GCAAAATAAA AAGAGAGGAA TGAAAAATAT GTATGTAATA TAAACACTTA CCAAACTTTT
GATCGTTTGC TAATATCAAC AGCCTATTTT CTTATTAA

>Vigan.02G300100.01
ATGGCGCGGT TTTCAGTGGT GTGGTGCGCG GTGGCGGTGC TATTGTGCGC CGTGGCGAGC GGGTCATGGT TGGAGGATGC
GAATCCGATT CGGATGGTGT CGGACGTGGA GGGGCAGGTG ATTCAGGTGA TAGGTCAGTG CCGGAGCGCG GTGTCGTTTG
CTCGGTTCGT TGGGAGGTTC GGGAAGAGTT ACCAGAACGA GGAAGAGATG AAGCGGAGGT ACGATATATT CTCGCGAAAC
CTCAGGTTCA TCCGCGCCCA CAACAAGAAA CGTTTGCCCT ACACTCTCTC CGTTAATCAT TTTGCTGATT GGACTTGGGA
GGAATTCCAA ACACACAGAC TAGGTGCTGC TCAAAATTGC TCTGCCACTC TTAAAGGCAA CCACAAGCTT ACCGATGCTG
TTCTTCCTCC AGTGAAAGAC TGGAGGCAAG AAAATATAGT GAGCGCAGTT AAAGACCAAG GCAGCTGCGG ATCATGCTGG
ACATTCAGCA CAACCGGGGC TTTAGAAGCA GCCTATGCAC AAGCGCATGG AAAGAGTATC TCTCTTTCTG AGCAGCAACT
AGTGGATTGT GCTGGTCATT TCAACAACTT TGGCTGTAAT GGTGGGTTGC CATCACAAGC CTTTGAGTAC ATTAAATACA
ATGGTGGGCT TGACACAGAG GAAGCATATC CTTACACGGG AAAAGACGGT GTCTGCAAAT TTTCAGCTGA AAATGTTGGG
ATTCGAGTCC TTGATTCTGT CAACATCACC TTGGGTGCTG AGGATGAATT AAAACATGCA GTTGCATTTG TTCGACCAGT
TAGTGTGGCC TTTGAGGTTG TTAATGGGTT CCGATTCTAT GAGAAAGGAG TTTACACCAG TGACACTTGC GGTACCACTC
CCCTGGATGT GAACCATGCT GTTCTTGCTG TTGGGTATGG AGTTGAAAAT GGTGTCCCAT ATTGGCTCAT TAAAAACTCA
TGGGGAGAAT CTTGGGGTGA CAATGGCTAC TTCAAGATGG AATTGGGGAA GAACATGTGC GGTGTTGCAA CTTGTGCTTC
TTATCCAATT GTGGCCTAA

>Vigan.02G300100.01
MARFSVVWCA VAVLLCAVAS GSWLEDANPI RMVSDVEGQV IQVIGQCRSA VSFARFVGRF GKSYQNEEEM KRRYDIFSRN
LRFIRAHNKK RLPYTLSVNH FADWTWEEFQ THRLGAAQNC SATLKGNHKL TDAVLPPVKD WRQENIVSAV KDQGSCGSCW
TFSTTGALEA AYAQAHGKSI SLSEQQLVDC AGHFNNFGCN GGLPSQAFEY IKYNGGLDTE EAYPYTGKDG VCKFSAENVG
IRVLDSVNIT LGAEDELKHA VAFVRPVSVA FEVVNGFRFY EKGVYTSDTC GTTPLDVNHA VLAVGYGVEN GVPYWLIKNS
WGESWGDNGY FKMELGKNMC GVATCASYPI VA*