GBrowse Details

Vigan.02G303900.01

Basic Information:
Name: Vigan.02G303900.01
Multiple alignment
Variant Information
Position: Chr02:41986045..41989765 (+ strand)
Length: 3721
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1K7, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: helicase activity (GO:0004386)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ATP-dependent helicase activity (GO:0008026)
InterPro: RNA helicase, ATP-dependent, DEAD-box, conserved site (IPR000629)
Helicase, C-terminal (IPR001650)
DNA/RNA helicase, DEAD/DEAH box type, N-terminal (IPR011545)
Helicase, superfamily 1/2, ATP-binding domain (IPR014001)
RNA helicase, DEAD-box type, Q motif (IPR014014)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:51.10,52.73,53.78,43.54,81.40,105.00,69.18,62.74
Arabidopsis thaliana homolog: AT1G54270.1, AT1G72730.1, AT3G13920.2
Automatic updates:
Name: NM_001255135 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic initiation factor 4A-15-like (LOC100786735), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001377520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic initiation factor 4A-15-like (LOC100786735), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:41986045..41986922 (+ strand)
Length: 878
Type: five_prime_UTR
Position: Chr02:41986923..41986990 (+ strand)
Length: 68
Type: CDS
Position: Chr02:41987144..41987250 (+ strand)
Length: 107
Type: CDS
Position: Chr02:41987911..41988341 (+ strand)
Length: 431
Type: CDS
Position: Chr02:41988700..41989335 (+ strand)
Length: 636
Type: CDS
Position: Chr02:41989336..41989765 (+ strand)
Length: 430
Type: three_prime_UTR


>Vigan.02G303900.01
GTTGCTCTCT CTTCTTCTCT ATTCTCCGAT GCGATGTAAT CTGTCTCTTT CTAATTCTGT TGATTCAATC GATGTACTTC
TTATCTTTAT TTTATGATTG GATCTGCTGA TGCTGTTCTG GTTTGTTAGC TTCTGTTTGT TTTGTGCTCT ACTAAAGCTT
AGGAAGTTAC TTTTAGCATC TATTTTGTTT CCTTTCTGTG CCCATGACAT CTTATAGAGT TCTTGATTTT TTTTTTATTT
ATTTTGCGCA TGTGGAATCA AATTTATTGT TGAATTTTGG TTTTGTTTCA GACTGTGTTC TCTGTCCCTA TTTTTTGGTT
TCTTTAGTTT TATTTTACCT GATCTGCTTA GCATGTGTTC CTACTCGGAT TGGAATTACT TGTTTGATTT TATTAGAAGT
GGGACATAGT GGAACACTTT TTGGTTGGAA ACATGAACAT TTATTTGGAA GTGGTTTGTT GGAATTGCAT TTGATATATG
GTTTGAGTAT CAATTACTTT TTGGTGTGTT ATTAACAGAA TGGGTATGCT CTATGTCCTG AGTTAGATTG AGAGTAAATT
GATGTTAAGA CGTTGATGCA TTTTTTTTTA CTTTTGGGAG TTGTAAATAG AATCACTTCC GGATTTAGGA CTACACTACG
TTGAAAGCTT AGATTTGTTA TTATTGTATT TATGTTAATA TACGGACAAT GTTTTTTTTG TCATGGTAAA ATAAAACAAT
GTTGTCTCCT ATTTGGATGC AGTGAGAGAA CATACGAGTG GAAATATGGA CTTTGCTATT TTTTTTGGCA GTACTGGGCC
ATTTGAGTTG GAAATGGACT TTGATGAATA TTCTCTAATA AATGGTGTCA TAATACTATT TCTTTCCATC TTGCAGTCAT
GGCAGGACTT GCACCTGAGG TATCACAGTT TGATGGTCGT CATTATGATA ACAAGATGAA TGAGTTGCTT ACATCTGATG
GACAAGATTT CTTCACATCC TACGACGAGG TTTATGAAAG TTTTGATGCT ATGGGTTTGC AAGAAAATCT TCTGAGAGGC
ATTTATGCAT ATGGTTTTGA GAAGCCATCA GCTATTCAGC AAAGGGGAAT AGTTCCATTC TGCAAGGGAC TTGATGTTAT
ACAACAGGCT CAGTCTGGAA CTGGAAAGAC AGCAACTTTC TGTTCTGGAA TTCTGCAGCA ACTTGATTAT AATGTGACAG
AATGCCAAGC CTTGGTTTTA GCACCAACTC GGGAGCTTGC TCAGCAGATT GAGAAGGTTA TGCGGGCACT TGGAGATTAT
CTTGGTGTTA AGGTGCATGC ATGTGTGGGA GGTACCAGTG TCCGTGAAGA CCAACGCATC CTATCAAGTG GTGTTCATGT
TGTTGTTGGT ACTCCTGGTC GCGTATTTGA TATGCTGCGC AGACAGTCAC TTAGACCAGA TTACATCAAG ATGTTTGTAT
TGGATGAGGC TGATGAAATG CTTTCCCGTG GTTTTAAAGA TCAGATCTAT GATATATTCC AGCTACTTCC AACCAAAATT
CAAGTGGGAG TTTTCTCTGC TACAATGCCT CCTGAGGCAC TTGAGATCAC CAGGAAATTT ATGAACAAAC CAGTGAGGAT
CCTGGTGAAG CGTGATGAGC TCACCTTGGA GGGTATTAAG CAGTTTTATG TCAATGTTGA CAAAGAGGAA TGGAAGCTTG
ACACACTCTG TGATCTTTAT GAGACATTGG CAATTACTCA AAGTGTCATT TTCGTCAACA CCAGAAGAAA GGTTGATTGG
CTGACTGACA AAATGCGCAG CCGAGACCAC ACAGTCTCAG CAACCCACGG AGACATGGAC CAGAATACCA GAGACATTAT
TATGCGTGAA TTCCGCTCTG GGTCTTCCCG TGTTTTAATA ACTACTGATC TTTTGGCTCG TGGTATTGAT GTCCAGCAAG
TGTCTTTAGT TATAAATTAT GATCTCCCAA CACAGCCTGA GAATTATCTC CATCGTATTG GTCGTAGTGG GAGGTTTGGC
AGGAAAGGTG TTGCCATCAA TTTTGTCACA AAGGATGATG AGAAAATGCT GTACGACATT CAGAAGTTTT ACAACGTGCT
AATCGAAGAG CTGCCTTCAA ATGTTGCCGA ACTCCTTTGA TGATTTTTGT TCCATCATAT TAGAAGGAAG TTGGTTTCTG
AGGTAAGTGT TATGTAATGT TTCTTTTCTT TTTTGCCCCT TTTGTTGTAT TTCTGCTAAA CCTTGTTTGA CTTTTTCAAT
AGGTGTAGTA ATTTAATTTA CATTGTCAGT CGTCTGGATG TCCAAGTATA AGTACTTACA ATGTGGAATC ACATTATTGT
CCGAATGGTG TAGTGATAGT TGCACCTTTC TAACAACCGG GGTTTTCAAT TTTATGTTTT GGTAGTTTTA ACATTTGTTC
ATTTTTTCAA TGTATTCATA GTTCAATGGC GGTGTCCCTG GTACCCATTT TTGAGGTCCA GGGATTACAT ATGCTTTTTA
AAGAAACGCT TATTTTTATT GGGTGCTTCA TTTCCTCAAT TATAAAAATG GTGTTAATAA AATGAACTGG 

>Vigan.02G303900.01
ATGGCAGGAC TTGCACCTGA GGTATCACAG TTTGATGGTC GTCATTATGA TAACAAGATG AATGAGTTGC TTACATCTGA
TGGACAAGAT TTCTTCACAT CCTACGACGA GGTTTATGAA AGTTTTGATG CTATGGGTTT GCAAGAAAAT CTTCTGAGAG
GCATTTATGC ATATGGTTTT GAGAAGCCAT CAGCTATTCA GCAAAGGGGA ATAGTTCCAT TCTGCAAGGG ACTTGATGTT
ATACAACAGG CTCAGTCTGG AACTGGAAAG ACAGCAACTT TCTGTTCTGG AATTCTGCAG CAACTTGATT ATAATGTGAC
AGAATGCCAA GCCTTGGTTT TAGCACCAAC TCGGGAGCTT GCTCAGCAGA TTGAGAAGGT TATGCGGGCA CTTGGAGATT
ATCTTGGTGT TAAGGTGCAT GCATGTGTGG GAGGTACCAG TGTCCGTGAA GACCAACGCA TCCTATCAAG TGGTGTTCAT
GTTGTTGTTG GTACTCCTGG TCGCGTATTT GATATGCTGC GCAGACAGTC ACTTAGACCA GATTACATCA AGATGTTTGT
ATTGGATGAG GCTGATGAAA TGCTTTCCCG TGGTTTTAAA GATCAGATCT ATGATATATT CCAGCTACTT CCAACCAAAA
TTCAAGTGGG AGTTTTCTCT GCTACAATGC CTCCTGAGGC ACTTGAGATC ACCAGGAAAT TTATGAACAA ACCAGTGAGG
ATCCTGGTGA AGCGTGATGA GCTCACCTTG GAGGGTATTA AGCAGTTTTA TGTCAATGTT GACAAAGAGG AATGGAAGCT
TGACACACTC TGTGATCTTT ATGAGACATT GGCAATTACT CAAAGTGTCA TTTTCGTCAA CACCAGAAGA AAGGTTGATT
GGCTGACTGA CAAAATGCGC AGCCGAGACC ACACAGTCTC AGCAACCCAC GGAGACATGG ACCAGAATAC CAGAGACATT
ATTATGCGTG AATTCCGCTC TGGGTCTTCC CGTGTTTTAA TAACTACTGA TCTTTTGGCT CGTGGTATTG ATGTCCAGCA
AGTGTCTTTA GTTATAAATT ATGATCTCCC AACACAGCCT GAGAATTATC TCCATCGTAT TGGTCGTAGT GGGAGGTTTG
GCAGGAAAGG TGTTGCCATC AATTTTGTCA CAAAGGATGA TGAGAAAATG CTGTACGACA TTCAGAAGTT TTACAACGTG
CTAATCGAAG AGCTGCCTTC AAATGTTGCC GAACTCCTTT GA

>Vigan.02G303900.01
MAGLAPEVSQ FDGRHYDNKM NELLTSDGQD FFTSYDEVYE SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV
IQQAQSGTGK TATFCSGILQ QLDYNVTECQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH
VVVGTPGRVF DMLRRQSLRP DYIKMFVLDE ADEMLSRGFK DQIYDIFQLL PTKIQVGVFS ATMPPEALEI TRKFMNKPVR
ILVKRDELTL EGIKQFYVNV DKEEWKLDTL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR SRDHTVSATH GDMDQNTRDI
IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTKDDEKM LYDIQKFYNV
LIEELPSNVA ELL*