VIGGS:GBrowse

Vigan.02G304600.01

Basic Information:

Name:	Vigan.02G304600.01 Multiple alignment Variant Information
Position:	Chr02:42071271..42072709 (+ strand)
Length:	1439

Functional Information:

Description:	Similar to Ribosomal protein S16. [V9TLJ8, Trifolium repens]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S16 (IPR000307)
InterPro:	Ribosomal protein S16 domain (IPR023803)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.90,19.20,14.51,11.52,27.48,30.78,66.21,9.94
Arabidopsis thaliana homolog:	AT5G56940.1

Automatic updates:

Name:	NM_001249975 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499851 (LOC100499851), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251298 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305630 (LOC100305630), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr02:42071271..42071410 (+ strand)
Length:	140
Type:	five_prime_UTR

Position:	Chr02:42071411..42071543 (+ strand)
Length:	133
Type:	CDS

Position:	Chr02:42071680..42071725 (+ strand)
Length:	46
Type:	CDS

Position:	Chr02:42072107..42072329 (+ strand)
Length:	223
Type:	CDS

Position:	Chr02:42072330..42072709 (+ strand)
Length:	380
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G304600.01
TACAACTTGA GCATCAGAAG CCCAATGCGT CGTCGTTCAA TGAAAAAAAA AGTGTTGAGA TTGAGCTAGG AAACACATTG
CAGAAGTAAG CAGTGTTCTG CGACTAAACC CAGAACCCTA TTATTGCTTT GGCTCTGAAA ATGGTGGTGA GGATTCGGCT
CTCGCGGTTC GGATGCAAGA ACAAACCCTT CTATCGGGTC ATGGCTGCTG ATAGCAGATC TCCCAGAGAT GGCAAACACA
TTGAAGTTCT CGGTTACTAC AATCCCTTAC CAGGTCAAGA TGGTGGCAAG AGAATGGGTC TCAACTTCGA AAGGGTGAAG
TATTGGCTTT CTGTTGGAGC TCAGCCTTCA GAGCCTGTGG AACGGCTTCT ATTCAGAGCT GGGGTACTGC CCCCACCACC
TATGGTGGCA ATGGGGCGTA AAGGTGGACT GCGTGATACT CGCCCTGTCG ATGCTCTAAC TGGCCGTGTG CTGAATCAAG
AGAAGTCTGC CAATGAGAAG AACAATGACC ATGAACATGA AGCTGCTGAA AACCCTTTTT AGGATTCTTA CAGGAGAACT
GAATAGAATA ACTACTGTTT TCTTGGAGAA GTTGGGTTCT TTTCTGGGGT AAGACACTCA TCAAATTTGT AGGCCAATAA
CTATTATGTG TAATTCAGTC AATGAAAGTG AATTGATAGG CTATCCTACT CTGATTTGCA TGCTACTTTT GTTTTTGTGG
AACTTTTTAA AGCTGCTAGG GCGATAGCAA AGGTAATTCA TTTTATTTTG GGCTTATTCC TTCATTGCCC TGTAAATGGA
TTTGTGGAAT TTTGTACTCT CCAATTAATT TCTTTGTTTA TGTGCGTGCA TTTTTGAAAT GTTAATAAAT TACATGATAA
ATTACTATTG TATAGAGATT GTTTTGATTT AAGAACTAGC AG

[show][hide][copy]CDS

>Vigan.02G304600.01
ATGGTGGTGA GGATTCGGCT CTCGCGGTTC GGATGCAAGA ACAAACCCTT CTATCGGGTC ATGGCTGCTG ATAGCAGATC
TCCCAGAGAT GGCAAACACA TTGAAGTTCT CGGTTACTAC AATCCCTTAC CAGGTCAAGA TGGTGGCAAG AGAATGGGTC
TCAACTTCGA AAGGGTGAAG TATTGGCTTT CTGTTGGAGC TCAGCCTTCA GAGCCTGTGG AACGGCTTCT ATTCAGAGCT
GGGGTACTGC CCCCACCACC TATGGTGGCA ATGGGGCGTA AAGGTGGACT GCGTGATACT CGCCCTGTCG ATGCTCTAAC
TGGCCGTGTG CTGAATCAAG AGAAGTCTGC CAATGAGAAG AACAATGACC ATGAACATGA AGCTGCTGAA AACCCTTTTT
AG

[show][hide][copy]PROTEIN

>Vigan.02G304600.01
MVVRIRLSRF GCKNKPFYRV MAADSRSPRD GKHIEVLGYY NPLPGQDGGK RMGLNFERVK YWLSVGAQPS EPVERLLFRA
GVLPPPPMVA MGRKGGLRDT RPVDALTGRV LNQEKSANEK NNDHEHEAAE NPF*