GBrowse Details

Vigan.02G304700.01

Basic Information:
Name: Vigan.02G304700.01
Multiple alignment
Variant Information
Position: Chr02:42076060..42079344 (+ strand)
Length: 3285
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1J5, Glycine max]
GO: Biological Process: nucleosome assembly (GO:0006334)
Cellular Component: nucleus (GO:0005634)
InterPro: Nucleosome assembly protein (NAP) (IPR002164)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:124.30,92.66,45.30,53.17,74.99,47.11,74.02,56.50
Automatic updates:
Name: NM_001251385 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nucleosome assembly protein 1 (SNAP-1), mRNA.
PubMed ID: 8544812 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr02:42076060..42076251 (+ strand)
Length: 192
Type: five_prime_UTR
Position: Chr02:42076252..42076297 (+ strand)
Length: 46
Type: CDS
Position: Chr02:42076404..42076447 (+ strand)
Length: 44
Type: CDS
Position: Chr02:42076620..42076715 (+ strand)
Length: 96
Type: CDS
Position: Chr02:42077147..42077239 (+ strand)
Length: 93
Type: CDS
Position: Chr02:42077472..42077550 (+ strand)
Length: 79
Type: CDS
Position: Chr02:42077626..42077687 (+ strand)
Length: 62
Type: CDS
Position: Chr02:42077797..42077981 (+ strand)
Length: 185
Type: CDS
Position: Chr02:42078097..42078274 (+ strand)
Length: 178
Type: CDS
Position: Chr02:42078361..42078404 (+ strand)
Length: 44
Type: CDS
Position: Chr02:42078553..42078745 (+ strand)
Length: 193
Type: CDS
Position: Chr02:42079025..42079093 (+ strand)
Length: 69
Type: CDS
Position: Chr02:42079094..42079344 (+ strand)
Length: 251
Type: three_prime_UTR


>Vigan.02G304700.01
GTCACAGAGA TTTTTAGCAT ATTAAATTAT TTAATTATGA AAATAAAATA ATAGTAGTAA ATAATAATAG TGTGAGGGTA
AGAGTGTGTT TAAAAAGAGT GGGAGAAGAA GACTCGACGG CATCGTCAAA CCCTGCTTCA TTCCACTCTT TCTAGGGTTT
TAGTTCTCTT TTCCTCTTCA ACCTTCTTCT CAATGTCCAA CAACAACGAA AACATCACCA TGACCGATCT CACTTCTGCC
CTCAACGAAG ACAATCGCGC CGATCTAGTC AGTGCTCTCA AGAGTAAGAT ACAGAGTCTG GCTGGACAGC ATTCGGATGT
TCTGGAGACT TTATCGCCTA ACGTCAGGAA GCGTGTTGAA TCTCTTAGAG AGATTCAGGG TAAACATGAC GAACTAGAGG
CAGAATTCTT CAAGGAGAGA GAAGCTCTTG AAGCTAAGTA CCAAAAGTTG TATCAGCCGT TATACACAAA GCGCTATGAA
ATAGTAAATG GTGTTACTGA AGTGGAAGGA CAAGCAGTTG AAACAACAGA TGGATCAGAA GAGGATAATG AGAAAGGAGT
ACCTTCTTTT TGGCTCAATG CAATGAAAAA TAATGATGTG TTGGCTGAAG AGATTTCAGA GCGTGATGAA GGTGCTCTCA
AGTTTCTAAA AGACATTAAG TGGGGCCGGA TAGATAACCC TAAAGGATTC AAGCTTGATT TCTTTTTTGA TACCAATCCG
TACTTTTCAA ACTCTGTCTT GACTAAAACA TATCATATGA TTGATGAGGA TGAGCCTATA TTGGAGAAAG CAATTGGGAC
GGAAATTGAA TGGTACCCGG GAAAATGCTT GACTCAGAAG GTGTTGAAGA AAAAGCCCAA GAAGGGTTCA AAGAATGCTA
AACCAATTAC CAAAACTGAA AACTGTGAAA GCTTCTTCAA TTTTTTCAAA CCACCAGAAG TTCCTGAAGA TGATGATGAC
ATTGATGAAG ATTTGGCCGA GGAACTTCAG AACCAAATGG AACAAGATTA TGACATTGGG TCAACTATAA GGGACAAAAT
TATCCCTCAT GCAGTATCTT GGTTTACTGG GGAGGCTGTT CAGGGAGATG AGTTTGAAGA CCTGGAGGAT GATGAGGACG
AAGATGATGA TGAGGAGGAT GAAGATGAGG ATGAGGATGA AGATGATGAT GATGACGAGG AAGAGGAGGA AGACAGTAAG
ACTAAAAAGA AGAAGAGTGG AAGGGCACAG ATTGGTGATG GTCAGCAGGG TGAGCGACCT CCAGAGTGCA AGCAGCAGTA
ATTTAGTTCT TTGATGTTTG TTATGCAGCT GATGGGTATT TTTGAGGTCC TATGGTGCTT GATGGGTTTC AGTTTCGTGC
AGTTTTGGGT GGTCCTTGAT TCATTTTCCT CCCTAGATTC TATAGTCTGA ATTTATTTTA GTCCCTTCTT TTTTTCCATT
CATTCGGAGA GAATGTGGTT ATTATATATA GTCAGGTATA CTATGATTTG TTATTTTGGA ATTTATGTCA TTTCAGATAC
TGAATTATTT TA

>Vigan.02G304700.01
ATGTCCAACA ACAACGAAAA CATCACCATG ACCGATCTCA CTTCTGCCCT CAACGAAGAC AATCGCGCCG ATCTAGTCAG
TGCTCTCAAG AGTAAGATAC AGAGTCTGGC TGGACAGCAT TCGGATGTTC TGGAGACTTT ATCGCCTAAC GTCAGGAAGC
GTGTTGAATC TCTTAGAGAG ATTCAGGGTA AACATGACGA ACTAGAGGCA GAATTCTTCA AGGAGAGAGA AGCTCTTGAA
GCTAAGTACC AAAAGTTGTA TCAGCCGTTA TACACAAAGC GCTATGAAAT AGTAAATGGT GTTACTGAAG TGGAAGGACA
AGCAGTTGAA ACAACAGATG GATCAGAAGA GGATAATGAG AAAGGAGTAC CTTCTTTTTG GCTCAATGCA ATGAAAAATA
ATGATGTGTT GGCTGAAGAG ATTTCAGAGC GTGATGAAGG TGCTCTCAAG TTTCTAAAAG ACATTAAGTG GGGCCGGATA
GATAACCCTA AAGGATTCAA GCTTGATTTC TTTTTTGATA CCAATCCGTA CTTTTCAAAC TCTGTCTTGA CTAAAACATA
TCATATGATT GATGAGGATG AGCCTATATT GGAGAAAGCA ATTGGGACGG AAATTGAATG GTACCCGGGA AAATGCTTGA
CTCAGAAGGT GTTGAAGAAA AAGCCCAAGA AGGGTTCAAA GAATGCTAAA CCAATTACCA AAACTGAAAA CTGTGAAAGC
TTCTTCAATT TTTTCAAACC ACCAGAAGTT CCTGAAGATG ATGATGACAT TGATGAAGAT TTGGCCGAGG AACTTCAGAA
CCAAATGGAA CAAGATTATG ACATTGGGTC AACTATAAGG GACAAAATTA TCCCTCATGC AGTATCTTGG TTTACTGGGG
AGGCTGTTCA GGGAGATGAG TTTGAAGACC TGGAGGATGA TGAGGACGAA GATGATGATG AGGAGGATGA AGATGAGGAT
GAGGATGAAG ATGATGATGA TGACGAGGAA GAGGAGGAAG ACAGTAAGAC TAAAAAGAAG AAGAGTGGAA GGGCACAGAT
TGGTGATGGT CAGCAGGGTG AGCGACCTCC AGAGTGCAAG CAGCAGTAA

>Vigan.02G304700.01
MSNNNENITM TDLTSALNED NRADLVSALK SKIQSLAGQH SDVLETLSPN VRKRVESLRE IQGKHDELEA EFFKEREALE
AKYQKLYQPL YTKRYEIVNG VTEVEGQAVE TTDGSEEDNE KGVPSFWLNA MKNNDVLAEE ISERDEGALK FLKDIKWGRI
DNPKGFKLDF FFDTNPYFSN SVLTKTYHMI DEDEPILEKA IGTEIEWYPG KCLTQKVLKK KPKKGSKNAK PITKTENCES
FFNFFKPPEV PEDDDDIDED LAEELQNQME QDYDIGSTIR DKIIPHAVSW FTGEAVQGDE FEDLEDDEDE DDDEEDEDED
EDEDDDDDEE EEEDSKTKKK KSGRAQIGDG QQGERPPECK QQ*